Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30643
         (489 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...   102   6e-24
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    26   0.80 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   4.2  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    23   7.4  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    22   9.8  

>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score =  102 bits (245), Expect = 6e-24
 Identities = 53/94 (56%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
 Frame = +3

Query: 15  KAFQKQATVFLNRKGGMKRKDMRHHKIVGLGFKTPRXAIDGTYIDKKCPFTGNVSIRXRI 194
           +AFQKQ  + LNRK   ++K +R H  +GLGFKTP+ AI GTYIDKKCPFTG++SIR RI
Sbjct: 8   RAFQKQLGINLNRKNVSRKKGLRMHHSIGLGFKTPKEAITGTYIDKKCPFTGHISIRGRI 67

Query: 195 LTGVVQKMKMQRTIVIRRDY--FTTYPNTIGSRN 290
           LTGVV+K  +   + IRRDY  F    +T   RN
Sbjct: 68  LTGVVRKCIV--LLYIRRDYLQFIRKYDTFEKRN 99



 Score = 92.3 bits (219), Expect = 8e-21
 Identities = 40/52 (76%), Positives = 46/52 (88%)
 Frame = +2

Query: 254 LHYLPKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLK 409
           L ++ KY+ FEKR+RNM +HLSPCF DVE GDIVT+GECRPLSKTVRFNVLK
Sbjct: 86  LQFIRKYDTFEKRNRNMRLHLSPCFRDVEAGDIVTLGECRPLSKTVRFNVLK 137


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 25.8 bits (54), Expect = 0.80
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 376 RSAFADRYNITNLHVHEARRQM 311
           R  +ADRY+  + H+H  R  M
Sbjct: 502 RPTYADRYDANDYHLHAGRNAM 523


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 200  GEDAATDRNVTSEGTLLVNVGT 135
            GED   D+   S+GTLL  +GT
Sbjct: 1268 GEDDTGDKKTDSDGTLL-EIGT 1288


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 376 RSAFADRYNITNLHVHEARRQM 311
           R   ADRY+  + H+H  R  M
Sbjct: 502 RPTDADRYDAHDYHLHTGRNAM 523


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 72  SSSCHLSCSGKRWPVS 25
           +SSC L  +G RW VS
Sbjct: 447 ASSCFLPEAGARWDVS 462


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,765
Number of Sequences: 2352
Number of extensions: 9750
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)