Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30643
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           105   1e-23
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   105   2e-23
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           101   2e-22
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    30   0.96 
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,...    29   1.7  
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    27   6.8  
At5g04440.1 68418.m00441 expressed protein                             27   9.0  
At3g28330.1 68416.m03539 F-box family protein-related contains T...    27   9.0  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.0  

>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  105 bits (253), Expect = 1e-23
 Identities = 54/88 (61%), Positives = 60/88 (68%), Gaps = 5/88 (5%)
 Frame = +3

Query: 6   ETEKAFQKQATVFLNRKGGMKRK-----DMRHHKIVGLGFKTPRXAIDGTYIDKKCPFTG 170
           +TEKAF KQ  VFL+ K   K K       R  K +GLGFKTPR AIDG Y+DKKCPFTG
Sbjct: 4   QTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTG 63

Query: 171 NVSIRXRILTGVVQKMKMQRTIVIRRDY 254
            VSIR RIL G     KMQRTI++RRDY
Sbjct: 64  TVSIRGRILAGTCHSAKMQRTIIVRRDY 91



 Score = 79.8 bits (188), Expect = 9e-16
 Identities = 35/53 (66%), Positives = 43/53 (81%)
 Frame = +2

Query: 254 LHYLPKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
           LH++ KY R+EKRH N+  H+SPCF  V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 92  LHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143


>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  105 bits (252), Expect = 2e-23
 Identities = 54/88 (61%), Positives = 62/88 (70%), Gaps = 5/88 (5%)
 Frame = +3

Query: 6   ETEKAFQKQATVFLNRKGGMKRK-----DMRHHKIVGLGFKTPRXAIDGTYIDKKCPFTG 170
           +TEKAF KQ  VFL+ K   K K       R  K +GLGFKTPR AI+GTYID+KCPFTG
Sbjct: 4   QTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTG 63

Query: 171 NVSIRXRILTGVVQKMKMQRTIVIRRDY 254
            VSIR RIL+G     KMQRTI++RRDY
Sbjct: 64  TVSIRGRILSGTCHSAKMQRTIIVRRDY 91



 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 37/53 (69%), Positives = 44/53 (83%)
 Frame = +2

Query: 254 LHYLPKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
           LH++ KY R+EKRH N+  H+SPCF  V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 92  LHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  101 bits (243), Expect = 2e-22
 Identities = 54/88 (61%), Positives = 60/88 (68%), Gaps = 5/88 (5%)
 Frame = +3

Query: 6   ETEKAFQKQATVFLNRK--GGMKRKDM---RHHKIVGLGFKTPRXAIDGTYIDKKCPFTG 170
           +TEKAF KQ  VFL+ K  G  KR      R  K +GLGFKTPR AIDG YID KCPFTG
Sbjct: 4   QTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTG 63

Query: 171 NVSIRXRILTGVVQKMKMQRTIVIRRDY 254
            VSIR RIL G     KMQRTI++RR+Y
Sbjct: 64  TVSIRGRILAGTCHSAKMQRTIIVRRNY 91



 Score = 80.2 bits (189), Expect = 7e-16
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +2

Query: 254 LHYLPKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
           LH++ KY R+EKRH N+  H+SPCF  V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 92  LHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 266 PKYNRFEKRHRNMSVHLSPCFMDVEIGDIVTIGECRPLSKTVRFNVLKV 412
           PKY R  +  +    H  P     ++GD+V + + RP+SKT  F  L V
Sbjct: 77  PKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEKSRPISKTKSFVALPV 123


>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 609

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 127 RLTVPTLTRSVPSLVTFRSVAASSPASFRK 216
           R   PT TR  PS +  R+  +SSP SF K
Sbjct: 52  RSPTPTKTRRCPSPIVTRTAPSSSPESFLK 81


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 42  FLNRKGGMKRKDMRHHKIVGLGFKTPRXAIDGTYIDKKCPFTG 170
           FL+   G+K K+  HHK  G+  K  +  I+  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At5g04440.1 68418.m00441 expressed protein
          Length = 255

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 296 CAVSRTYCIWVGSEVIAADHD---SSLHLHFLNDAGEDAATDRNVTSEGTLLVNV 141
           C +    C   GS V+ A +D   +S+      D+ ++ ++++ +TS+  + VN+
Sbjct: 142 CCIKLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITSDAVIEVNI 196


>At3g28330.1 68416.m03539 F-box family protein-related contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 349

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 309 CICRLASWTWRLV 347
           C+ RL SW WRLV
Sbjct: 241 CVWRLESWQWRLV 253


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 326 SKATNARTYSCAVSRTYCIWVGSEVIAADHDSSLHLHFLNDAG 198
           SK    + YSC +S  +  WV    +AA H+ S  + ++   G
Sbjct: 96  SKIIEEKRYSCIISSPFTPWV--PAVAASHNISCAILWIQACG 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,678
Number of Sequences: 28952
Number of extensions: 196716
Number of successful extensions: 452
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)