BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30642 (760 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 126 2e-29 03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 126 2e-29 12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 32 0.43 05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 30 2.3 05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 29 4.0 04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198... 29 4.0 11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.3 06_03_0543 + 21967787-21970261 29 5.3 01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 5.3 01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.0 11_03_0122 - 10313934-10314069,10315889-10316319 28 9.3 07_01_0903 - 7607588-7607953 28 9.3 05_03_0489 - 14662378-14664957 28 9.3 01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.3 01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.3 >07_03_1272 - 25360180-25360286,25360454-25360658,25360748-25360945, 25361034-25361296,25361865-25362009 Length = 305 Score = 126 bits (304), Expect = 2e-29 Identities = 56/86 (65%), Positives = 69/86 (80%) Frame = +1 Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429 P+D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134 Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507 HQPI E++ NIP IA C+TDSP+R+ Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRY 160 Score = 92.3 bits (219), Expect = 4e-19 Identities = 41/64 (64%), Positives = 50/64 (78%) Frame = +2 Query: 62 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 241 L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71 Query: 242 IENP 253 IENP Sbjct: 72 IENP 75 Score = 84.2 bits (199), Expect = 1e-16 Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 4/89 (4%) Frame = +3 Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEK 674 P + DI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE++ Sbjct: 157 PMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAK- 215 Query: 675 DEQQAKEQAVVP----TKPEVVAPVHEDW 749 EQ+ +E A+V E AP + W Sbjct: 216 -EQEEEEAALVAPDYGAVAEYAAPAADTW 243 >03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701, 4319791-4320053,4320453-4320597 Length = 305 Score = 126 bits (304), Expect = 2e-29 Identities = 56/86 (65%), Positives = 69/86 (80%) Frame = +1 Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429 P+D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134 Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507 HQPI E++ NIP IA C+TDSP+R+ Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRY 160 Score = 95.5 bits (227), Expect = 4e-20 Identities = 44/75 (58%), Positives = 55/75 (73%) Frame = +2 Query: 29 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 208 ++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60 Query: 209 KLVLAARAVVAIENP 253 KL LAAR +VAIENP Sbjct: 61 KLQLAARVIVAIENP 75 Score = 84.6 bits (200), Expect = 8e-17 Identities = 36/68 (52%), Positives = 50/68 (73%) Frame = +3 Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEK 674 P + DI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ Sbjct: 157 PMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKE 216 Query: 675 DEQQAKEQ 698 E++A Q Sbjct: 217 QEEEAPAQ 224 >12_01_1093 - 11374087-11374140,11374337-11374438,11375793-11375873, 11376005-11376343 Length = 191 Score = 32.3 bits (70), Expect = 0.43 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Frame = +1 Query: 205 GKTCSGCSCCRSHREP-RDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 381 G+ SGC CR RD ++ R RAV AA + P R+TPG + Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113 Query: 382 AFREPRLLIVLD 417 RE IV D Sbjct: 114 LVREMMKSIVAD 125 >05_05_0195 + 23142830-23143714,23144288-23144314,23144657-23144866, 23144976-23145242,23146290-23146376,23146495-23146553, 23147166-23147768,23148063-23148192,23148570-23149100, 23149636-23149743,23149911-23150456,23150957-23151079, 23151494-23151709 Length = 1263 Score = 29.9 bits (64), Expect = 2.3 Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 1/117 (0%) Frame = +1 Query: 196 SYLGKTCSGCSCCRSHREPRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGA-FTNQ 372 SYL T G + R R RDV ++ R L A + + G+ F NQ Sbjct: 121 SYLITTRVGEAEVRVRRRFRDVVALADRLAAAHRGLFIPARPDKSVVEGQVMQRHDFVNQ 180 Query: 373 IQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFGTLLSHATPSLP 543 +A + + P H P I + P + T LS A PS P Sbjct: 181 RCSALQRYLRRLAAHPVVGHSPDLRTFLTEPGAIPAFEGEQPRYWTTTLSSAAPSTP 237 >05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203, 8771320-8771482 Length = 264 Score = 29.1 bits (62), Expect = 4.0 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1 Query: 505 FGTLLSHATPSLPTLLV*CGGCWHVKC*GFVVCF--PVT 615 F ++++ +PS+ + CG C+ VKC G C PVT Sbjct: 69 FSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107 >04_04_0730 + 27618981-27619143,27619237-27619349,27619695-27619888, 27620141-27620465 Length = 264 Score = 29.1 bits (62), Expect = 4.0 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1 Query: 505 FGTLLSHATPSLPTLLV*CGGCWHVKC*GFVVCF--PVT 615 F ++++ +PS+ + CG C+ VKC G C PVT Sbjct: 69 FSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107 >11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961, 23812210-23812285,23813064-23813072,23813243-23813335, 23813578-23813581,23813780-23814703,23814926-23815909, 23816073-23816118,23816376-23816951,23817253-23817798, 23817820-23818416 Length = 2252 Score = 28.7 bits (61), Expect = 5.3 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -2 Query: 129 TFSAPRWVVAASILVTSSSLRASTSNP 49 TF A RWV+AA V + L AS S+P Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126 >06_03_0543 + 21967787-21970261 Length = 824 Score = 28.7 bits (61), Expect = 5.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +3 Query: 555 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 644 L W++L RE +LRGV P + ++++ + F Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501 >01_06_0364 - 28749825-28750053,28750442-28750621,28751018-28751147, 28751442-28751756,28752033-28752075,28752108-28752500 Length = 429 Score = 28.7 bits (61), Expect = 5.3 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +3 Query: 270 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 362 L+ LR T+V RAHRC A T CF Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127 >01_06_0902 + 32853708-32853739,32854787-32855596,32856094-32856157, 32856375-32856446 Length = 325 Score = 28.3 bits (60), Expect = 7.0 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = +1 Query: 136 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 243 P +C+ T C C K CS CSC + H Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300 >11_03_0122 - 10313934-10314069,10315889-10316319 Length = 188 Score = 27.9 bits (59), Expect = 9.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 654 DPEESEKDEQQAKEQAVVPTKPEVVAPVH 740 D EE +DE++ KE+AV T + +P H Sbjct: 31 DDEEEAEDEEEGKEEAVDKTGEKPFSPGH 59 >07_01_0903 - 7607588-7607953 Length = 121 Score = 27.9 bits (59), Expect = 9.3 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 572 QQPPHQTNRVGRLGVAWDSNVPNLSG 495 QQPP Q ++G G D+NVP+ +G Sbjct: 30 QQPPWQRRQMGGGGADADNNVPDQAG 55 >05_03_0489 - 14662378-14664957 Length = 859 Score = 27.9 bits (59), Expect = 9.3 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = +3 Query: 609 RDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVVPTKPEVVAPVHED 746 R DV+ +L F +ES +D E T P VVA +H D Sbjct: 768 RPSMGDVLWNLEFALQLQESTEDSSSLTEGTSASTSPLVVARLHSD 813 >01_07_0027 - 40578075-40578437,40578647-40578767,40578852-40578952, 40579176-40579451,40579485-40579805,40581609-40581623, 40581969-40582295,40583287-40583538 Length = 591 Score = 27.9 bits (59), Expect = 9.3 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = -3 Query: 656 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 540 V + Q NIP LVT TTK + F PPH +G Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497 >01_06_0575 - 30357556-30357582,30357698-30357944,30358039-30358161, 30358275-30358301,30358475-30358633,30359764-30359948, 30360225-30360293,30360432-30362354,30363018-30363339, 30363506-30363543 Length = 1039 Score = 27.9 bits (59), Expect = 9.3 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +1 Query: 172 WYPCDQLASYLGKTCSGCSCCRSHREP 252 ++PC +GKT S C + HR P Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,276,662 Number of Sequences: 37544 Number of extensions: 550929 Number of successful extensions: 1570 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1570 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 2027850416 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -