Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30642
(760 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 128 3e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 123 1e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 123 1e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 33 0.16
At2g22340.1 68415.m02651 hypothetical protein 33 0.27
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.9
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 28 7.7
At1g72710.1 68414.m08408 casein kinase, putative similar to case... 28 7.7
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 128 bits (310), Expect = 3e-30
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P+D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134
Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
HQPI E + NIP+IA C+TDSP+RF
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRF 160
Score = 88.2 bits (209), Expect = 5e-18
Identities = 39/70 (55%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESE- 671
P + DI IP N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYR+PEE++
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKP 216
Query: 672 KDEQQAKEQA 701
+DE +A QA
Sbjct: 217 EDEDEAGPQA 226
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +2
Query: 62 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 241
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 242 IENP 253
IENP
Sbjct: 72 IENP 75
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 123 bits (297), Expect = 1e-28
Identities = 55/86 (63%), Positives = 66/86 (76%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P+D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
HQPI E + NIP IA C+TDSP+ F
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGF 161
Score = 85.0 bits (201), Expect = 5e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +2
Query: 74 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 253
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 84.2 bits (199), Expect = 8e-17
Identities = 37/70 (52%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEK 674
P DI IP N K HSIG ++WLLAR VL++RG + Q+WDV+VDLFFYR+PEE+++
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQ 217
Query: 675 D-EQQAKEQA 701
+ +++A+ QA
Sbjct: 218 EGDEEAEVQA 227
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 123 bits (297), Expect = 1e-28
Identities = 55/86 (63%), Positives = 66/86 (76%)
Frame = +1
Query: 250 PRDVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 429
P+D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 430 HQPITEASYVNIPVIALCNTDSPLRF 507
HQPI E + NIP IA C+TDSP+ F
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGF 161
Score = 85.0 bits (201), Expect = 5e-17
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +2
Query: 74 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 253
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +3
Query: 495 PTKIWDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 638
P DI IP N K HSIG ++WLLAR VL++RG + Q+WDV+V+
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 394 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFGTLLSHATPS 537
P ++V D + I EAS + IPV+A+ + + PL F +++ P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 112 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 231
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 349 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 450
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/86 (24%), Positives = 43/86 (50%)
Frame = +2
Query: 32 SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 211
S+++S +++LA ++ + ++A T L E ++ + ++ GT + + E
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702
Query: 212 LVLAARAVVAIENPVMCSSSHHGPSV 289
L+ AR + + + CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728
>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158
Length = 465
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 675 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 553
P +FL G GRR NQ G + + +++ H+P N
Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,228,093
Number of Sequences: 28952
Number of extensions: 421257
Number of successful extensions: 1144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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