Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30641
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      44   9e-05
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      41   0.001
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      40   0.002
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   3.6  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   4.7  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   8.2  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKTNNQSTH-DV*TRR 685
           IK+L+    ++S T  ++VNA+YFKG W  +F E  T    F+V +++      ++ TR+
Sbjct: 113 IKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172

Query: 686 L 688
           +
Sbjct: 173 M 173



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +3

Query: 336 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 494
           E+++ NK++ HD  ++ E F   +R+ ++S++  +DF +K   A K +N WV +
Sbjct: 54  EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQ 107


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +3

Query: 264 FPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNID 443
           FP D   +     ++ +  +  G ++ MAN+++   G ++ E F   S++ F++++  +D
Sbjct: 62  FPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVD 121

Query: 444 FSKNTVAAK-SINDWVEE 494
           + KN+  A+ ++N WVE+
Sbjct: 122 YVKNSNGARDTVNRWVEQ 139



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 634
           IK+L+     +  T   LVNA+YFKG+W   F+   T    F
Sbjct: 145 IKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKF 186


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKTN 652
           I DL+ P   +  T   LVNAIYFKG W   F +  +   +F  + +N
Sbjct: 108 ICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSN 155



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 336 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEE 494
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEE 102


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 388 RILQSFPGTSSIRTSKTLISRRIQSQLS 471
           R+  SFPG S      TL++R  QSQ+S
Sbjct: 65  RLYDSFPGASRSEAESTLLARMRQSQVS 92


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 64  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 231
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 72  CHCRDGDSKQTNDCL 28
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 229 HQKLKLTEREEAAPKMPRGQRFSL 158
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,879,523
Number of Sequences: 59808
Number of extensions: 383660
Number of successful extensions: 1186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)