Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30641
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein... 55 4e-08
AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or cys... 55 4e-08
AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or cys... 48 5e-06
AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin prote... 48 5e-06
U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein ... 45 6e-05
U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein ... 45 6e-05
U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein ... 45 6e-05
AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or cys... 45 6e-05
AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or cys... 45 6e-05
AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or cys... 45 6e-05
AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or cys... 43 2e-04
AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin prote... 43 2e-04
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 43 2e-04
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 43 2e-04
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 31 1.0
U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z78542-6|CAB01749.2| 695|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z93383-11|CAI58635.1| 279|Caenorhabditis elegans Hypothetical p... 28 7.2
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr... 27 9.6
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 9.6
>U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein 6
protein.
Length = 375
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKTNNQST 664
IK ++NPDS+S AVL NA YFK W +KF + T R+F+ S+ + + T
Sbjct: 150 IKKIINPDSISEELVAVLTNAFYFKANWQTKFKKESTYKREFFSSENSKRET 201
>AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 375
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKTNNQST 664
IK ++NPDS+S AVL NA YFK W +KF + T R+F+ S+ + + T
Sbjct: 150 IKKIINPDSISEELVAVLTNAFYFKANWQTKFKKESTYKREFFSSENSKRET 201
>AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 359
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKTNNQ 658
IKDL+ DS ++A A LVNA+YFK W SKF + T+ R+F+ S+ ++
Sbjct: 137 IKDLIPADSANNAFA-FLVNAMYFKADWQSKFAKESTTGREFFTSEAESR 185
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/54 (29%), Positives = 34/54 (62%)
Frame = +3
Query: 330 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVE 491
GVE K+ N+V+V+ + +++ ++ + +++DFS+ AAK++N +VE
Sbjct: 77 GVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFVE 130
>AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin protein
2 protein.
Length = 359
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKTNNQ 658
IKDL+ DS ++A A LVNA+YFK W SKF + T+ R+F+ S+ ++
Sbjct: 137 IKDLIPADSANNAFA-FLVNAMYFKADWQSKFAKESTTGREFFTSEAESR 185
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/54 (29%), Positives = 34/54 (62%)
Frame = +3
Query: 330 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVE 491
GVE K+ N+V+V+ + +++ ++ + +++DFS+ AAK++N +VE
Sbjct: 77 GVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFVE 130
>U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform a protein.
Length = 366
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 273 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 449
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 450 KNTVAAKSINDWVEE 494
A++IN++V E
Sbjct: 121 NKEATAEAINNFVRE 135
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVS 643
IK ++ DS++S AVL NA+YFK W +KF + T +F+ S
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDSTFKSEFFSS 185
>U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform b protein.
Length = 366
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 273 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 449
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 450 KNTVAAKSINDWVEE 494
A++IN++V E
Sbjct: 121 NKEATAEAINNFVRE 135
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVS 643
IK ++ DS++S AVL NA+YFK W +KF + T +F+ S
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDSTFKSEFFSS 185
>U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein 7,
isoform c protein.
Length = 365
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 273 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 449
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 450 KNTVAAKSINDWVEE 494
A++IN++V E
Sbjct: 121 NKEATAEAINNFVRE 135
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVS 643
IK ++ DS++S AVL NA+YFK W +KF + T +F+ S
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDSTFKSEFFSS 185
>AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 365
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 273 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 449
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 450 KNTVAAKSINDWVEE 494
A++IN++V E
Sbjct: 121 NKEATAEAINNFVRE 135
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVS 643
IK ++ DS++S AVL NA+YFK W +KF + T +F+ S
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDSTFKSEFFSS 185
>AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 273 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 449
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 450 KNTVAAKSINDWVEE 494
A++IN++V E
Sbjct: 121 NKEATAEAINNFVRE 135
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVS 643
IK ++ DS++S AVL NA+YFK W +KF + T +F+ S
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDSTFKSEFFSS 185
>AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 273 DDAIRTEFASKSRDLRSI-KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 449
D+ + FA+ S L + +G E+K+AN V+ G K+ +++ + ++N+ ++DF
Sbjct: 61 DEQLEQHFANISAALLAAERGTEVKLANHVFTRAGFKIKQSYLDDVKKLYNAGASSLDFD 120
Query: 450 KNTVAAKSINDWVEE 494
A++IN++V E
Sbjct: 121 NKEATAEAINNFVRE 135
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVS 643
IK ++ DS++S AVL NA+YFK W +KF + T +F+ S
Sbjct: 141 IKKIIGSDSINSDLVAVLTNALYFKADWQNKFKKDSTFKSEFFSS 185
>AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKTNNQ 658
I D++ PD+L A +L+NAI+F+G W KF E ++ +F +S T N+
Sbjct: 147 IPDMIKPDNLKDVDA-ILINAIFFQGDWRRKFGE--PAESNFSISATENR 193
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 321 SIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEE 494
S+ VE +AN+++V + + F R+ +N++ IDF K+ AAK +N ++ E
Sbjct: 84 SVNDVETLIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAAKIMNQFISE 141
>AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin protein
1 protein.
Length = 366
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKTNNQ 658
I D++ PD+L A +L+NAI+F+G W KF E ++ +F +S T N+
Sbjct: 147 IPDMIKPDNLKDVDA-ILINAIFFQGDWRRKFGE--PAESNFSISATENR 193
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 321 SIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEE 494
S+ VE +AN+++V + + F R+ +N++ IDF K+ AAK +N ++ E
Sbjct: 84 SVNDVETLIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAAKIMNQFISE 141
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 634
IK++ DS+ A A +L+N+IYFK W KFD S++DF
Sbjct: 139 IKNIATQDSIKDAIA-LLINSIYFKADWDDKFDGMSVSEQDF 179
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 273 DDAIRTEFASKSRDLRS-IKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 449
D+ + F+ S+++++ KGVE+ +ANKVY+ G ++ F + + +D +++D +
Sbjct: 60 DEQLVEHFSFVSKEVKNGTKGVEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLT 119
Query: 450 KNTVAAKSINDWV 488
A + IN +V
Sbjct: 120 -TPAAVQEINSFV 131
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 509 IKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 634
IK++ DS+ A A +L+N+IYFK W KFD S++DF
Sbjct: 139 IKNIATQDSIKDAIA-LLINSIYFKADWDDKFDGMSVSEQDF 179
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 273 DDAIRTEFASKSRDLRS-IKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 449
D+ + F+ S+++++ KGVE+ +ANKVY+ G ++ F + + +D +++D +
Sbjct: 60 DEQLVEHFSFVSKEVKNGTKGVEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLT 119
Query: 450 KNTVAAKSINDWV 488
A + IN +V
Sbjct: 120 -TPAAVQEINSFV 131
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence of
males (increasedx chromosome loss) protein 1, isoform a
protein.
Length = 1281
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 202 LAQLALASDGETHEELLKLSASLTTMLYEQNSRVKAVIFDQLKALSLK 345
+AQ+A+ + +ELL+L + LT YE++S + +V Q+ AL LK
Sbjct: 911 IAQVAMKDFTKAEKELLRLESLLTKKQYERHSLLHSVKLGQI-ALPLK 957
>U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical
protein C09B9.3 protein.
Length = 884
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = -3
Query: 494 FFYPIVNRLSCDCILREINVLDVRIEDVPGNDCKILV*FSTIMNVYFIRHFKLNA----- 330
+++PIV C++ + V + + + +D V F N+Y + +
Sbjct: 268 YYFPIVTVFQFICLMGWLKVAEALLNPLGEDDDDFEVNFLIDSNIYMTMSYNCDVATDSY 327
Query: 329 FN*SKITAFTREFCSYSIVVREADSFKSSSWVS 231
FN K+ FT+ +I+ + +K S W S
Sbjct: 328 FNFFKVNPFTKSTYKNNIIFQILFRWKGSVWKS 360
>Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical
protein F36F2.2 protein.
Length = 290
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 250 KALHGFHHQKLKLTEREEAAPKMPRGQRFSL 158
K L H ++ T EE+ P P+GQRF L
Sbjct: 163 KGLEEVHEIEVDKTVIEESIPNQPKGQRFDL 193
>Z78542-6|CAB01749.2| 695|Caenorhabditis elegans Hypothetical
protein F20D1.7 protein.
Length = 695
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 52 IAIAAMAAVTNLSNVLKN-GNDNFTARMFTEVV-KNNPGKSVVLSAFSVLPPLAQLALAS 225
+A+ ++ + N+L+N G D+ R V+ +NN KS+ + F +P L L L+
Sbjct: 124 MALTSLLELDLSDNMLENLGADSIHIRSIQRVILRNNQIKSIGVHVFRYMPTLKMLDLSG 183
Query: 226 DGET 237
+ T
Sbjct: 184 NNMT 187
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
C05A9.1 protein.
Length = 1283
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = +1
Query: 61 AAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETH 240
A A ++ V++N D + R+ T VV + S V++A S+ L +A G TH
Sbjct: 1202 ATSALDSDSEKVVQNALDTASERLSTVVVAHR--LSTVVNADSIAV-LKNGKVAEQG-TH 1257
Query: 241 EELLKLSASLTTMLYEQNSRVKAVI 315
EELL+ + ++ +Q +V+ +I
Sbjct: 1258 EELLRKRSIYWRLVQKQGIQVETLI 1282
>Z93383-11|CAI58635.1| 279|Caenorhabditis elegans Hypothetical
protein F54B8.16 protein.
Length = 279
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 143 TSVNILAVKLSFPFLSTLERFVTAAIAAMAIVNKQMIVFMFV 18
TSV + +K +F F+ TLERF++ N++ I F ++
Sbjct: 87 TSVTMGIIKGTFAFMITLERFISVFFPIHYRNNRRKIPFYWI 128
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -2
Query: 141 FGKHSGCEVIVSIFEYIREICDG--CHCRDG---DSKQTNDCLHV 22
FG + GC+ I + ++ DG CHCRDG D + +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133
>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
protein F57C7.4 protein.
Length = 1484
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 136 TEVVKNNPGKSVVLSAFSVLPPLAQLAL 219
T ++KN P KS V +F++ P QLA+
Sbjct: 674 TTIIKNVPSKSDVFVSFTIPPAGTQLAM 701
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -2
Query: 141 FGKHSGCEVIVSIFEYIREICDG--CHCRDG---DSKQTNDCLHV 22
FG + GC+ I + ++ DG CHCRDG D + +C+ +
Sbjct: 4095 FGNNGGCKHICT------DVRDGFYCHCRDGFRPDPQSPKECIDI 4133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,715,451
Number of Sequences: 27780
Number of extensions: 286913
Number of successful extensions: 889
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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