Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30640
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 241 4e-64
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.24
06_02_0282 + 13720419-13720985 30 2.3
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.0
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 29 4.0
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 5.2
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 5.2
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 28 9.2
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 241 bits (590), Expect = 4e-64
Identities = 109/164 (66%), Positives = 136/164 (82%), Gaps = 1/164 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FR P+++K +KELF+ + +YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
GDRG ARASG++A VI HNPD +R+KLPSGAKK++PSS RA
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRA 164
Score = 149 bits (362), Expect = 2e-36
Identities = 65/82 (79%), Positives = 73/82 (89%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
++M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 685 STVKRGTSAGRKVGLIAARRTG 750
STV+R G+KVGLIAARRTG
Sbjct: 223 STVRRDAPPGQKVGLIAARRTG 244
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 528 WRWTY*QTYFESWKGIPQVQG 590
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>06_02_0282 + 13720419-13720985
Length = 188
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 643 HPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTG 750
+PHGGG H + +R G + +AARR G
Sbjct: 47 NPHGGGGHAPLPPPQNPRRPNLVGAEEVAVAARRRG 82
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 406 LWKLRHCDWT 435
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 346 LRHSSNRHHISNFKSCFLSTINKLACVELRDNEELLPCLELVWIAEVYNSQRCTSTR 176
+R NR + C+ CVE +D LLP LE V+++ + +S+ CTS +
Sbjct: 70 VRKRRNREELRGLFECYRRI---RLCVERKD-ARLLPELEQVYLSLIASSRGCTSVQ 122
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 5.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 528 WRWTY*QTYFESWKGIPQVQG 590
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 619 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 726
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +2
Query: 368 EEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWSVLLLEVDVLT 547
EEK+ + L G +IG N K T +KL G +K + VLL E +VL
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499
Query: 548 NLF 556
N F
Sbjct: 500 NYF 502
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,207,903
Number of Sequences: 37544
Number of extensions: 510858
Number of successful extensions: 1556
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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