Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30640
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 271 3e-73
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 201 4e-52
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 41 0.001
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 30 1.8
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 29 3.1
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_6614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 271 bits (665), Expect = 3e-73
Identities = 125/164 (76%), Positives = 142/164 (86%), Gaps = 1/164 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FRDPY++K RKELF+ + +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKT 120
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNRA
Sbjct: 121 GDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRA 164
Score = 160 bits (389), Expect = 1e-39
Identities = 71/82 (86%), Positives = 76/82 (92%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
+++VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 163 RALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHP 222
Query: 685 STVKRGTSAGRKVGLIAARRTG 750
STV+R T AGRKVGLIAARRTG
Sbjct: 223 STVRRDTPAGRKVGLIAARRTG 244
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 201 bits (491), Expect = 4e-52
Identities = 91/122 (74%), Positives = 107/122 (87%), Gaps = 1/122 (0%)
Frame = +2
Query: 149 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVM 325
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+ + +YTGQF+YCGKKA L++GN +
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60
Query: 326 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 505
PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSN
Sbjct: 61 PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120
Query: 506 RA 511
RA
Sbjct: 121 RA 122
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 41.1 bits (92), Expect = 0.001
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Frame = +2
Query: 143 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVP-KLYTGQFVYC--GKK---AT 304
IK V + +DP R A +A+V +++L I P ++ G + GK A
Sbjct: 56 IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111
Query: 305 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 484
L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169
Query: 485 KVLPS 499
K + S
Sbjct: 170 KEVSS 174
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 454 TLSIRIVSNHSGEVSRGTCQTTSISHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 281
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 280 KLACVELRDNEELLP 236
CV +++ P
Sbjct: 136 NQRCVSFNLKKQITP 150
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 594 FDLVLVVCPSSFQNRFVNT--STSSNNTDHALLLDGRTFLAPDGSFT 460
F L V PSS QN F + + ++ T L+LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 341 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 517
P G I+ + +GD+ R +GN T A + +PS L + +RAWS
Sbjct: 218 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 275
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 341 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWS 517
P G I+ + +GD+ R +GN T A + +PS L + +RAWS
Sbjct: 332 PNGRILPEIPNHVGDKHEKKR-NGNAKTNEADRIGADSSSTAIPSSCTSTLSNHSRAWS 389
>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 731 IRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTYGQQLRLTLYLWYA 570
IRP + V L V + + WLP + + P Y +R TL+L Y+
Sbjct: 222 IRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQYKHAVRSTLFLRYS 275
>SB_6614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 334 SNRHHISNFKSCFLSTINKLACVELRDNEE 245
+NRH I + + ST NK C +D E+
Sbjct: 196 TNRHRIGKYDATAASTKNKQKCTTTKDTEQ 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,100,850
Number of Sequences: 59808
Number of extensions: 565507
Number of successful extensions: 1469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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