Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30640
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 253 9e-68
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 36 0.031
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical p... 29 3.5
Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical p... 29 3.5
Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81017-8|CAC70094.2| 988|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical pr... 29 3.5
U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein. 29 3.5
AY288941-1|AAP44084.1| 987|Caenorhabditis elegans EGL-15 protein. 29 3.5
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 6.2
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical p... 28 8.2
Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical pr... 28 8.2
U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical p... 28 8.2
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 28 8.2
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 253 bits (620), Expect = 9e-68
Identities = 112/164 (68%), Positives = 137/164 (83%), Gaps = 1/164 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
+ FRDPYK+KT K + + ++TGQF++CG KA +++GN++PVG +PEGT +CN+E K
Sbjct: 61 IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NRA
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRA 164
Score = 152 bits (369), Expect = 2e-37
Identities = 66/82 (80%), Positives = 74/82 (90%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
++M+G+VAGGGR DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 163 RAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHP 222
Query: 685 STVKRGTSAGRKVGLIAARRTG 750
STV+R SAG+KVGLIAARRTG
Sbjct: 223 STVRRDASAGKKVGLIAARRTG 244
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 35.9 bits (79), Expect = 0.031
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 314 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 472
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 31.1 bits (67), Expect = 0.88
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 428 IGHNPDAKRTRVKLPSGAKKVLPSSNRAWSVLLLE 532
IGH D +RTR LP+G KKVL + + +LL++
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90
>Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical
protein F58A3.2c protein.
Length = 1158
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 378 WEIEVVWHVPLETSPL*LDTILMLSVQE*SYRLEPRRFCHQATEHGRYCCWR 533
WEI + P T + L +++E YR+EP C Q H CWR
Sbjct: 866 WEIMTLGGTPYPTIAM---PELYANLKE-GYRMEPPHLCPQEVYHLMCSCWR 913
>Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical
protein F58A3.2e protein.
Length = 1051
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 378 WEIEVVWHVPLETSPL*LDTILMLSVQE*SYRLEPRRFCHQATEHGRYCCWR 533
WEI + P T + L +++E YR+EP C Q H CWR
Sbjct: 866 WEIMTLGGTPYPTIAM---PELYANLKE-GYRMEPPHLCPQEVYHLMCSCWR 913
>Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical protein
F58A3.2d protein.
Length = 1096
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 378 WEIEVVWHVPLETSPL*LDTILMLSVQE*SYRLEPRRFCHQATEHGRYCCWR 533
WEI + P T + L +++E YR+EP C Q H CWR
Sbjct: 866 WEIMTLGGTPYPTIAM---PELYANLKE-GYRMEPPHLCPQEVYHLMCSCWR 913
>Z81017-8|CAC70094.2| 988|Caenorhabditis elegans Hypothetical
protein F58A3.2b protein.
Length = 988
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 378 WEIEVVWHVPLETSPL*LDTILMLSVQE*SYRLEPRRFCHQATEHGRYCCWR 533
WEI + P T + L +++E YR+EP C Q H CWR
Sbjct: 813 WEIMTLGGTPYPTIAM---PELYANLKE-GYRMEPPHLCPQEVYHLMCSCWR 860
>Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical protein
F58A3.2a protein.
Length = 1040
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 378 WEIEVVWHVPLETSPL*LDTILMLSVQE*SYRLEPRRFCHQATEHGRYCCWR 533
WEI + P T + L +++E YR+EP C Q H CWR
Sbjct: 865 WEIMTLGGTPYPTIAM---PELYANLKE-GYRMEPPHLCPQEVYHLMCSCWR 912
>U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.
Length = 1040
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 378 WEIEVVWHVPLETSPL*LDTILMLSVQE*SYRLEPRRFCHQATEHGRYCCWR 533
WEI + P T + L +++E YR+EP C Q H CWR
Sbjct: 865 WEIMTLGGTPYPTIAM---PELYANLKE-GYRMEPPHLCPQEVYHLMCSCWR 912
>AY288941-1|AAP44084.1| 987|Caenorhabditis elegans EGL-15 protein.
Length = 987
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 378 WEIEVVWHVPLETSPL*LDTILMLSVQE*SYRLEPRRFCHQATEHGRYCCWR 533
WEI + P T + L +++E YR+EP C Q H CWR
Sbjct: 812 WEIMTLGGTPYPTIAM---PELYANLKE-GYRMEPPHLCPQEVYHLMCSCWR 859
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 133
+GR R+ +KG F +HT K L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 134 HGYIKGVVKDIIHDPGRGAPLAVVHFR 214
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 134 HGYIKGVVKDIIHDPGRGAPLAVVHFR 214
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical
protein Y57G11C.44 protein.
Length = 155
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 71 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 196
+S ++RK + LD+++ G K ++KDI +D + P+
Sbjct: 1 MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42
>Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical
protein T05F1.8 protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 593 LTLYLWYALPAFKIGLSI-RPPPATIPTML 507
LT W+ +FK+ +++ RPPP +P L
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPQMPESL 338
>U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical
protein C33F10.12 protein.
Length = 392
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 593 LTLYLWYALPAFKIGLSI-RPPPATIPTML 507
LT W+ +FK+ +++ RPPP +P L
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPRMPESL 338
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 27.9 bits (59), Expect = 8.2
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Frame = -1
Query: 692 TVEALPIC*WLP-----PP*GCSTGFMATPRTYG--QQLRLTL-YLWYALPAFKIGLSIR 537
T ALP C + P P +T TPRTY ++ T+ W LP
Sbjct: 301 TTTALPPCVYTPAPPATAPPATATPATQTPRTYSTTTPIKTTVPQQWTTLPP-----GPE 355
Query: 536 PPPATIPTMLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQRHVPDDLYL 381
P P P+ CC + TV+ + +Q C QS ++QR + + Y+
Sbjct: 356 PTPGQGPSGECCYIDLRRIQVTVSCGVSIGNQCCHQSCSGTYQRQINLNYYI 407
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,145,918
Number of Sequences: 27780
Number of extensions: 413997
Number of successful extensions: 1115
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -