Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30640
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 244 5e-65
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 239 1e-63
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 236 1e-62
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 4e-05
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 46 4e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 46 4e-05
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 30 1.9
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 4.4
At1g40129.1 68414.m04766 hypothetical protein 29 4.4
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 5.8
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 28 7.7
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 244 bits (597), Expect = 5e-65
Identities = 112/164 (68%), Positives = 137/164 (83%), Gaps = 1/164 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FR P++FK +KELF+ + +YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
GDRG LARASG++A VI HNPD+ TR+KLPSG+KK++PS RA
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRA 164
Score = 145 bits (352), Expect = 2e-35
Identities = 64/82 (78%), Positives = 72/82 (87%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
++M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 685 STVKRGTSAGRKVGLIAARRTG 750
STV+R G+KVGLIAARRTG
Sbjct: 223 STVRRDAPPGQKVGLIAARRTG 244
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 239 bits (585), Expect = 1e-63
Identities = 109/164 (66%), Positives = 135/164 (82%), Gaps = 1/164 (0%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 203 VHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 379
V FR P++FK +KELF+ + +YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120
Query: 380 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
GDRG ARASG++A VI HNPD +R+KLPSG+KK++PS RA
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRA 164
Score = 150 bits (363), Expect = 1e-36
Identities = 65/82 (79%), Positives = 73/82 (89%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
++M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 685 STVKRGTSAGRKVGLIAARRTG 750
STV+R G+KVGLIAARRTG
Sbjct: 223 STVRRDAPPGKKVGLIAARRTG 244
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 236 bits (578), Expect = 1e-62
Identities = 109/165 (66%), Positives = 137/165 (83%), Gaps = 2/165 (1%)
Frame = +2
Query: 23 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 200 VVHFRDPYKFKTRKELFIVPK-LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 376
V FR P+++ +KELF+ + +YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120
Query: 377 MGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRA 511
+GDRG LARASG++A VI HNP++ TRVKLPSG+KK+LPS+ RA
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRA 165
Score = 149 bits (362), Expect = 1e-36
Identities = 66/82 (80%), Positives = 71/82 (86%)
Frame = +1
Query: 505 QSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 684
++M+G VAGGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 164 RAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHA 223
Query: 685 STVKRGTSAGRKVGLIAARRTG 750
STV+R SAG KVG IAARRTG
Sbjct: 224 STVRRDKSAGAKVGQIAARRTG 245
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 580 KYKVKRNCWPYVRGVAM-NPVEHPHGG 657
K +KRN W VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +2
Query: 311 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 490
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 491 LPSSNRA 511
+ + RA
Sbjct: 118 INAKCRA 124
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 499 KQQSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 660
K ++ +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 121 KCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +2
Query: 311 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 490
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 491 LPSSNRA 511
+ + RA
Sbjct: 118 INAKCRA 124
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 499 KQQSMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 660
K ++ +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 121 KCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 446 HQDCVQSQWRSFQRHVPDDLYLPFSLQDCTQW 351
H+ Q WRS + HV D+L LP ++C W
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSW 697
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 556 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 717
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At1g40129.1 68414.m04766 hypothetical protein
Length = 567
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 446 HQDCVQSQWRSFQRHVPDDLYLPFSLQDCTQWYP 345
H+ +++ F + P D LPF + CT W P
Sbjct: 325 HKQSPRAECNIFFKDKPPDATLPFKTRGCTLWRP 358
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 528 WRWTY*QTYFESWKGIPQVQG 590
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 346 LRHSSNRH---HISNFKSCFLSTINKLACVELRDNEELLPCLELVWIAEVY 203
L+ S+RH H+S LS + C+E+ D EL P L L IA Y
Sbjct: 1800 LQGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEMELSP-LNLGMIASYY 1849
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,235,914
Number of Sequences: 28952
Number of extensions: 386003
Number of successful extensions: 1076
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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