Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30639
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    55   7e-09
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    52   4e-08
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   1.1  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   2.0  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    27   2.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   2.7  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   6.1  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   8.1  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = +2

Query: 77  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VR
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVR 40



 Score = 51.6 bits (118), Expect = 6e-08
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
 Frame = +1

Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLPMDSVRS*FTMLKSWKS**CKTGST--AQRSLTVSL 354
           +RF+G   MP IGYG+NKKTR+ +P + +++      S          T  A+ +  VS 
Sbjct: 41  RRFRGTISMPKIGYGNNKKTRYCMP-NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSA 99

Query: 355 RRSGS*FVERAQQLSIRVTNAAARLRSQE 441
           R+     VE+A+ L ++VTNA A++RSQE
Sbjct: 100 RKRVE-IVEKARALGVKVTNAGAKVRSQE 127



 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 23/47 (48%), Positives = 32/47 (68%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKSPA 392
           PNG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  I  K+ A
Sbjct: 65  PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARA 111


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = +2

Query: 77  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VR
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVR 40



 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
 Frame = +1

Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLPMDSVRS*FTMLKSWKS**CKTGST--AQRSLTVSL 354
           +RF+G   MP IGYG+NKKTR+ +P + +++      S          T  A+ +  VS 
Sbjct: 41  RRFRGTISMPKIGYGNNKKTRYCMP-NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSA 99

Query: 355 RRSGS*FVERAQQLSIRVTNAAARLRSQE 441
           R+     VE+A+ L ++VTNA A++RSQE
Sbjct: 100 RKRVE-IVEKARALGVKVTNAGAKVRSQE 127



 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 23/47 (48%), Positives = 32/47 (68%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKSPA 392
           PNG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  I  K+ A
Sbjct: 65  PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARA 111


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -2

Query: 151 TPIPLKFV--IAIRLMPDKSLRP 89
           TP+P+KFV  IA+  MP  +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/57 (19%), Positives = 31/57 (54%)
 Frame = +3

Query: 165 LTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAE 335
           + TE + +  S++    R+ ++    + + N  R+  +HN++ ++ L+ Q  ++C +
Sbjct: 567 IDTEFSTVSHSLIF--QRIIYRLTQSASSDNALREWFLHNIESIDQLIAQAHEFCID 621


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 458 NYIY-SFSWDRRRAAAFVTLMLSCWALSTNQLPLLRRDTVSDLCAVLPVLHHQDFQL 291
           N++Y  F+WD + AA +     S    S  QLP L  +  + L     V++ QDF++
Sbjct: 217 NFVYVMFTWDNKAAALYQAFFRSGLTSSQIQLPNL-WNFFATLLVFGVVIYLQDFRV 272


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 8    RGSLSR--FLKKHTRWL*DLFTGPTIVKKRTKRFI 106
            RGS SR  F KKH RW   L +    V + T   I
Sbjct: 931  RGSSSRGAFYKKHNRWTEGLISAAKAVARATTTLI 965


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 224 VPTRRPVICSQWIP 265
           +PT+ PV C+ W P
Sbjct: 205 IPTKHPVTCADWRP 218


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 390 LGSFHESASASSKRHRERSLRSTSCFASSRFPAL*HCELGPYGIHW-EHMTGLLV 229
           L S +   +   ++ +E S+R        +FP     +  P GI W E  TG+ +
Sbjct: 94  LNSLNIQNATEDEKLQETSIRLLLYIVQRKFPEAVDLDWSPQGIPWTETSTGICI 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,624
Number of Sequences: 5004
Number of extensions: 36407
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)