Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30639
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 70 1e-12
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 70 1e-12
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 70 1e-12
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 52 2e-07
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 30 0.87
04_01_0410 - 5411135-5411581 29 1.5
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 29 2.0
08_01_0105 + 756998-757225,757311-758597 28 4.6
01_06_1148 - 34895562-34895690,34896339-34896464,34896579-348969... 27 6.1
04_04_0004 - 22089250-22089582,22090050-22090325,22090626-220912... 27 8.1
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922... 27 8.1
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/43 (72%), Positives = 35/43 (81%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 374
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEI 109
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2
Query: 77 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 10 IVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLP 255
++FKG LMPNIGYGS+KKTRH LP
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYLP 69
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/43 (72%), Positives = 35/43 (81%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 374
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEI 109
Score = 58.8 bits (136), Expect = 2e-09
Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +1
Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLPMDSVRS*FTMLKSWKS**CKTGS-TAQRSLTVSLR 357
++FKG LMPNIGYGS+KKTRH LP + + + A+ + VS +
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTK 104
Query: 358 RSGS*FVERAQQLSIRVTNAAARLRSQENE 447
+ VERA QL I VTN ARLRSQE+E
Sbjct: 105 KRKE-IVERAAQLDIVVTNKLARLRSQEDE 133
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2
Query: 77 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 10 IVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/43 (72%), Positives = 35/43 (81%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 374
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEI 176
Score = 59.7 bits (138), Expect = 1e-09
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = +1
Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLPMDSVRS*FTMLKSWKS**CKTGS-TAQRSLTVSLR 357
++FKG LMPNIGYGS+KKTRH LP + + + + A+ + VS +
Sbjct: 112 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTK 171
Query: 358 RSGS*FVERAQQLSIRVTNAAARLRSQENE 447
+ VERA QL I VTN ARLRSQE+E
Sbjct: 172 KRKE-IVERAAQLDIVVTNKLARLRSQEDE 200
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +2
Query: 77 IVKKRTKRFIRHQSDRYDKLK 139
IVKKR K+F R SDRY LK
Sbjct: 10 IVKKRVKQFKRPHSDRYLCLK 30
Score = 27.9 bits (59), Expect = 4.6
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 143 NWRKPRGIDNRVR 181
+WR+P+GID+RVR
Sbjct: 99 SWRRPKGIDSRVR 111
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +2
Query: 77 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 332 IVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 366
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLP 255
++FKG LMPNIGYGS+KKTRH LP
Sbjct: 367 RKFKGCTLMPNIGYGSDKKTRHYLP 391
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNR 320
Y PN F+K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 30.3 bits (65), Expect = 0.87
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 78 SSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQEDPSYAPN 257
SS GR D + + EV + E + +QG + H + QE PS APN
Sbjct: 997 SSTGGRNDEDSYTAPCQLEVDSMAQTKEVPSFEISEVQGDGI-VVHPISLDQE-PSNAPN 1054
Query: 258 GFRKV 272
FRK+
Sbjct: 1055 HFRKI 1059
>04_01_0410 - 5411135-5411581
Length = 148
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 276 VHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKSP-AAQHQSDECGRSPPVP 437
+HN E E M +NR + + + +KK + K P +AQ C + P P
Sbjct: 81 MHNFLEKETTMPRNRYWRTSVKSPIPAKKSEQPAQKKPSSAQKSKKVCRKKPKTP 135
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 299 NLDDAKQEVLRRDRSRCLFEEAEADSWKEPSSSASE 406
+LD AK+ LR+ RSR L + +A + K SSS+SE
Sbjct: 73 HLDRAKRRYLRKRRSR-LLPDPDATTAKPSSSSSSE 107
>08_01_0105 + 756998-757225,757311-758597
Length = 504
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 449 YSFSWDRRRAAAFVTLMLSCWALSTNQLPLLRRDTVSDLCAVLP 318
YSFSWD +R V L + L L + + S +C+++P
Sbjct: 281 YSFSWDDKRVGTKVLLAKGFLRNRLHGLELYKAHSDSYICSLVP 324
>01_06_1148 -
34895562-34895690,34896339-34896464,34896579-34896906,
34897127-34897216,34897284-34897360,34897519-34897593,
34897862-34897980,34899240-34899363,34899427-34899477,
34899590-34899688,34900104-34900214
Length = 442
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKSPAAQHQSD-ECGRSP 428
P G V+VH KELE N Y GV K + + ++P + + + EC +P
Sbjct: 322 PGGLLYVVVHEAKELEGKCNTN-PYVKLTFKGVEKKTKVVKENRNPRWKEEFEFECEETP 380
Query: 429 PVPGERINIIVL 464
+++++ VL
Sbjct: 381 --ANDKLHVEVL 390
>04_04_0004 -
22089250-22089582,22090050-22090325,22090626-22091282,
22091367-22091603
Length = 500
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 443 FSWDRRRAAAFVTLMLSCWALSTNQLPLLRRDTVSDLCAVLP 318
FSWD + A A V L +L RR +C +LP
Sbjct: 283 FSWDNKLAGARVLLSRRALVNGDRRLDAFRRLAEDFICRILP 324
>03_05_0398 +
23790257-23790323,23791116-23791339,23792208-23792275,
23794738-23794980,23795108-23795237,23797235-23797954
Length = 483
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 282 CELGPYGIHWEHMTGLLVGTVT 217
C LG + HW+H T L+ +T
Sbjct: 79 CILGYFAFHWDHATALISQALT 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,576,965
Number of Sequences: 37544
Number of extensions: 246500
Number of successful extensions: 866
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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