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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30639
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...    70   1e-12
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841     70   1e-12
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...    70   1e-12
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    52   2e-07
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    30   0.87 
04_01_0410 - 5411135-5411581                                           29   1.5  
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41...    29   2.0  
08_01_0105 + 756998-757225,757311-758597                               28   4.6  
01_06_1148 - 34895562-34895690,34896339-34896464,34896579-348969...    27   6.1  
04_04_0004 - 22089250-22089582,22090050-22090325,22090626-220912...    27   8.1  
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922...    27   8.1  

>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +3

Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 374
           Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 67  YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEI 109



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = +2

Query: 77  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
           IVKKR K+F R  SDRY  LK +WR+P+GID+RVR
Sbjct: 10  IVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLP 255
           ++FKG  LMPNIGYGS+KKTRH LP
Sbjct: 45  RKFKGCTLMPNIGYGSDKKTRHYLP 69


>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +3

Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 374
           Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 67  YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEI 109



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +1

Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLPMDSVRS*FTMLKSWKS**CKTGS-TAQRSLTVSLR 357
           ++FKG  LMPNIGYGS+KKTRH LP    +     +   +          A+ +  VS +
Sbjct: 45  RKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTK 104

Query: 358 RSGS*FVERAQQLSIRVTNAAARLRSQENE 447
           +     VERA QL I VTN  ARLRSQE+E
Sbjct: 105 KRKE-IVERAAQLDIVVTNKLARLRSQEDE 133



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = +2

Query: 77  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
           IVKKR K+F R  SDRY  LK +WR+P+GID+RVR
Sbjct: 10  IVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +3

Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 374
           Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK I
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEI 176



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
 Frame = +1

Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLPMDSVRS*FTMLKSWKS**CKTGS-TAQRSLTVSLR 357
           ++FKG  LMPNIGYGS+KKTRH LP    +     +   +       +  A+ +  VS +
Sbjct: 112 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTK 171

Query: 358 RSGS*FVERAQQLSIRVTNAAARLRSQENE 447
           +     VERA QL I VTN  ARLRSQE+E
Sbjct: 172 KRKE-IVERAAQLDIVVTNKLARLRSQEDE 200



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +2

Query: 77  IVKKRTKRFIRHQSDRYDKLK 139
           IVKKR K+F R  SDRY  LK
Sbjct: 10  IVKKRVKQFKRPHSDRYLCLK 30



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 143 NWRKPRGIDNRVR 181
           +WR+P+GID+RVR
Sbjct: 99  SWRRPKGIDSRVR 111


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = +2

Query: 77  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
           IVKKR K+F R  SDRY  LK +WR+P+GID+RVR
Sbjct: 332 IVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 366



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLP 255
           ++FKG  LMPNIGYGS+KKTRH LP
Sbjct: 367 RKFKGCTLMPNIGYGSDKKTRHYLP 391



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +3

Query: 246 YAPNGFRKVLVHNVKELEILMMQNR 320
           Y PN F+K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413


>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
            246893-247240,247882-248721,248786-248832,249470-249596,
            249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +3

Query: 78   SSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQEDPSYAPN 257
            SS  GR D           +  +    EV + E + +QG  +   H +   QE PS APN
Sbjct: 997  SSTGGRNDEDSYTAPCQLEVDSMAQTKEVPSFEISEVQGDGI-VVHPISLDQE-PSNAPN 1054

Query: 258  GFRKV 272
             FRK+
Sbjct: 1055 HFRKI 1059


>04_01_0410 - 5411135-5411581
          Length = 148

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 276 VHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKSP-AAQHQSDECGRSPPVP 437
           +HN  E E  M +NR +   +   + +KK +    K P +AQ     C + P  P
Sbjct: 81  MHNFLEKETTMPRNRYWRTSVKSPIPAKKSEQPAQKKPSSAQKSKKVCRKKPKTP 135


>05_01_0060 -
           418559-418577,418655-418738,418857-418966,419467-419577,
           419914-419992,420182-420264,420347-420439,420902-421810
          Length = 495

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +2

Query: 299 NLDDAKQEVLRRDRSRCLFEEAEADSWKEPSSSASE 406
           +LD AK+  LR+ RSR L  + +A + K  SSS+SE
Sbjct: 73  HLDRAKRRYLRKRRSR-LLPDPDATTAKPSSSSSSE 107


>08_01_0105 + 756998-757225,757311-758597
          Length = 504

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 449 YSFSWDRRRAAAFVTLMLSCWALSTNQLPLLRRDTVSDLCAVLP 318
           YSFSWD +R    V L         + L L +  + S +C+++P
Sbjct: 281 YSFSWDDKRVGTKVLLAKGFLRNRLHGLELYKAHSDSYICSLVP 324


>01_06_1148 -
           34895562-34895690,34896339-34896464,34896579-34896906,
           34897127-34897216,34897284-34897360,34897519-34897593,
           34897862-34897980,34899240-34899363,34899427-34899477,
           34899590-34899688,34900104-34900214
          Length = 442

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIRGKSPAAQHQSD-ECGRSP 428
           P G   V+VH  KELE     N  Y      GV  K + +   ++P  + + + EC  +P
Sbjct: 322 PGGLLYVVVHEAKELEGKCNTN-PYVKLTFKGVEKKTKVVKENRNPRWKEEFEFECEETP 380

Query: 429 PVPGERINIIVL 464
               +++++ VL
Sbjct: 381 --ANDKLHVEVL 390


>04_04_0004 -
           22089250-22089582,22090050-22090325,22090626-22091282,
           22091367-22091603
          Length = 500

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 443 FSWDRRRAAAFVTLMLSCWALSTNQLPLLRRDTVSDLCAVLP 318
           FSWD + A A V L          +L   RR     +C +LP
Sbjct: 283 FSWDNKLAGARVLLSRRALVNGDRRLDAFRRLAEDFICRILP 324


>03_05_0398 +
           23790257-23790323,23791116-23791339,23792208-23792275,
           23794738-23794980,23795108-23795237,23797235-23797954
          Length = 483

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 282 CELGPYGIHWEHMTGLLVGTVT 217
           C LG +  HW+H T L+   +T
Sbjct: 79  CILGYFAFHWDHATALISQALT 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,576,965
Number of Sequences: 37544
Number of extensions: 246500
Number of successful extensions: 866
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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