Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30639
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   3e-15
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)               34   0.072
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)               31   0.67 
SB_9026| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.4)             29   2.7  
SB_51078| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                28   4.7  
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       27   6.3  
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)                   27   6.3  
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)                  27   8.3  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
 Frame = +1

Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLPMDSVRS*FTMLKSWKS**CKTGS-TAQRSLTVSLR 357
           +RFKGQYLMPNIGYGSNKKTR ++P    +     +K  +       S  A+ +  VS R
Sbjct: 45  RRFKGQYLMPNIGYGSNKKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSR 104

Query: 358 RSGS*FVERAQQLSIRVTNAAARLRSQENE 447
           +  +  VERAQQLSI+VTN+ ARLRS+ENE
Sbjct: 105 KRKA-IVERAQQLSIKVTNSNARLRSEENE 133



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 374
           P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK I
Sbjct: 69  PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAI 109



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  PTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
           P I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVR
Sbjct: 8   PRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVR 44


>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
          Length = 758

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 23/90 (25%), Positives = 44/90 (48%)
 Frame = +3

Query: 156 LEVLTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAE 335
           +E L  E+  ++G++   +  +++Q+E     P G RK +   ++ELE ++         
Sbjct: 586 IEALRHENKVLKGTLEITEGEVKYQREHTGRTPKGKRKEIWREIRELETILKD------- 638

Query: 336 IAHGVSSKKRKLIRGKSPAAQHQSDECGRS 425
             H    K+++ I  K  A QH++ E  RS
Sbjct: 639 -VH----KEKRNIEKKYLAFQHENRELSRS 663


>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 839

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +3

Query: 216 RLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHG-VSSKKRKLIR 377
           +L+ Q+  PS  P  + +++V  ++E E+     RK+C EIA+  V S  R++++
Sbjct: 271 KLKCQKYWPSANPEEYGRLVVTPLEEEELSHYVIRKFCIEIANSDVESPAREIVQ 325


>SB_9026| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.4)
          Length = 195

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = +3

Query: 156 LEVLTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAE 335
           L+ L  +S   QG+I     RL+     P    NG       + K L   M +  +  +E
Sbjct: 71  LKFLIPQSGKEQGAIPKTGARLKGNSLAPGSQGNG-----QFSSKNLLAQMQRTPRSASE 125

Query: 336 IAHGVSSKKRKLIRGKSPAAQHQSDECG 419
             +  SSK ++    +S AA HQ  + G
Sbjct: 126 SQNEASSKSQQAHNNQSQAAAHQQTQAG 153


>SB_51078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = -3

Query: 393 LLGSFHESASASSKRHRERSLRSTSCFASSRFPAL*H-CEL------GPYGIHWE 250
           L+G  HE     +KR+R+R  R      SS  P + H C++       P G HWE
Sbjct: 88  LVGEVHECFFTDTKRYRKRWDRCFHHVQSSAGPVIWHGCKILARVLRVPLGAHWE 142


>SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 314 KQEVLRRDRSRCLFEEAEADSWKEPSSSASE*RMRPLASGPRRTNKYNCII 466
           K+E + +   +  F  +  DSW   SS +S    + +ASG  + N    ++
Sbjct: 186 KEEKVEKKIEKITFRRSSGDSWSSSSSGSSGLFNKAVASGNTKNNALGALM 236


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 378  HESASASSKRHRERSLRSTSCFASSR 301
            HE    +SKRHR+++      F+SSR
Sbjct: 2784 HEKCDDNSKRHRDKTASPAPSFSSSR 2809


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 59  LFTGPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRSDSRVNT*CP 211
           L+  P    +   R +  +S RY  ++R WRK   + N  +S+ +V + CP
Sbjct: 341 LYLEPIFSSEDINRQLPVESKRYQTMERIWRK---VMNAAKSNPQVISLCP 388


>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
          Length = 124

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 372 SASASSKRHRERSLRSTSCFASSRFPAL*HCEL 274
           S   + +R  +RS + ++C AS R P+   CEL
Sbjct: 21  STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53


>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
          Length = 265

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -3

Query: 426 ASGRIRHSDAELLGSFHESASASSKRHRERSLRSTSCFASSRFP 295
           AS + RHS +E     H S S S  R RER L   S  + S  P
Sbjct: 133 ASRKRRHSRSESPPVRHPSGSQSGDRQRERRLHKHSSPSISPSP 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,988
Number of Sequences: 59808
Number of extensions: 276163
Number of successful extensions: 1132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)