Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30639
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    60   1e-09
Z81115-2|CAB03292.1|  314|Caenorhabditis elegans Hypothetical pr...    30   0.78 
Z67990-7|CAA91938.1|  406|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    27   7.3  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      27   7.3  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    27   9.7  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 25/39 (64%), Positives = 33/39 (84%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRK 368
           PNG++KVLV NVK+L++L+MQ+ KY  EI HGVS+K RK
Sbjct: 70  PNGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRK 108



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 24/46 (52%), Positives = 32/46 (69%)
 Frame = +2

Query: 77  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRSDSRVNT*CPT 214
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVR   R     PT
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPT 56



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 30/89 (33%), Positives = 48/89 (53%)
 Frame = +1

Query: 181 QRFKGQYLMPNIGYGSNKKTRHMLPMDSVRS*FTMLKSWKS**CKTGSTAQRSLTVSLRR 360
           +RF+G   MP IG+GS+++TR +LP    +     +K       ++             +
Sbjct: 46  RRFRGMRAMPTIGHGSDRRTRFVLPNGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAK 105

Query: 361 SGS*FVERAQQLSIRVTNAAARLRSQENE 447
           S    VERA QL+I++TN  ARLR++E+E
Sbjct: 106 SRKGIVERAAQLNIKLTNGNARLRTEESE 134


>Z81115-2|CAB03292.1|  314|Caenorhabditis elegans Hypothetical
           protein T05D4.2 protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 315 NRKYCAEIAHGVSSKKRKLIRGKSPAAQHQSDECGRSPPVPGE 443
           N   C EIA  + S+ R  ++G     ++Q      +PP PGE
Sbjct: 55  NHCQCYEIAVDICSEPRVRVKGLDRCWEYQIQSTVNAPPTPGE 97


>Z67990-7|CAA91938.1|  406|Caenorhabditis elegans Hypothetical
           protein F02D10.7 protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 159 EVLTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEIL 305
           EVLT +       +++  ++  F ++D ++   GF  +L   V   +IL
Sbjct: 119 EVLTEKDEIFCSGVIEDWNQNHFAKQDENFGKEGFASILFDGVGSRQIL 167


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
           protein.
          Length = 1173

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 25/113 (22%), Positives = 47/113 (41%)
 Frame = +3

Query: 39  IQDGYKTCLQXRQSSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHR 218
           I+  Y+      +S K  R+DL    +  +T  R + + +E L       +  +   Q  
Sbjct: 658 IEANYELLQNDYKSMKEARKDLERDLQDVITEKRRLEIRVEQLMDSRNTDERVLSLCQDE 717

Query: 219 LRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIR 377
           L   QE+  Y  +G R  +     ELE   M+ +     +   V+ K+R +++
Sbjct: 718 LVESQEEAKYKEDGLRGKIDGFKHELENEKMKTQTLEENLL--VADKERGMLK 768


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 25/113 (22%), Positives = 47/113 (41%)
 Frame = +3

Query: 39  IQDGYKTCLQXRQSSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHR 218
           I+  Y+      +S K  R+DL    +  +T  R + + +E L       +  +   Q  
Sbjct: 658 IEANYELLQNDYKSMKEARKDLERDLQDVITEKRRLEIRVEQLMDSRNTDERVLSLCQDE 717

Query: 219 LRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIR 377
           L   QE+  Y  +G R  +     ELE   M+ +     +   V+ K+R +++
Sbjct: 718 LVESQEEAKYKEDGLRGKIDGFKHELENEKMKTQTLEENLL--VADKERGMLK 768


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 435 GPEASGRIRHSDAELLGSFHESASASSKRH 346
           G +  G I H     LG FHE A    +RH
Sbjct: 198 GCDVVGIISHEIGHALGIFHEQARPDQERH 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,573,818
Number of Sequences: 27780
Number of extensions: 204519
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)