Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30639
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    83   2e-18
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.3  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   7.0  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   7.0  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.3  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 83.0 bits (196), Expect = 2e-18
 Identities = 56/134 (41%), Positives = 69/134 (51%)
 Frame = +1

Query: 46  MAIRPVYRXDNRQKEDEEIYQASIGSL*QT*EELA*T*RY*QQSPQRFKGQYLMPNIGYG 225
           MAIRPVYR    +K  ++  +       +             +  +RFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 226 SNKKTRHMLPMDSVRS*FTMLKSWKS**CKTGSTAQRSLTVSLRRSGS*FVERAQQLSIR 405
           SNKKTRHMLP    +     +K  +    +              +     VERAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIR 120

Query: 406 VTNAAARLRSQENE 447
           VT A+ARLRSQENE
Sbjct: 121 VTYASARLRSQENE 134



 Score = 79.8 bits (188), Expect = 1e-17
 Identities = 34/37 (91%), Positives = 36/37 (97%)
 Frame = +2

Query: 71  PTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 181
           PTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVR
Sbjct: 9   PTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVR 45



 Score = 79.0 bits (186), Expect = 3e-17
 Identities = 36/41 (87%), Positives = 38/41 (92%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLI 374
           P GFRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK I
Sbjct: 70  PTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSI 110


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 441 LLGPEASGRIRHSDAELLGSFHESASASSKRHRERS 334
           LLG   SG   HSD+    S   S  +SS  H  +S
Sbjct: 375 LLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKS 410


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 435 GPEASGRIRHSDA 397
           GP   GR +H+DA
Sbjct: 45  GPNELGRFKHTDA 57


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 435 GPEASGRIRHSDA 397
           GP   GR +H+DA
Sbjct: 50  GPNELGRFKHTDA 62


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 435 GPEASGRIRHSDA 397
           GP   GR +H+DA
Sbjct: 50  GPNELGRFKHTDA 62


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 323  LPVLHHQDFQLFNI 282
            LP L H D Q FN+
Sbjct: 1031 LPELRHGDIQGFNV 1044


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 323  LPVLHHQDFQLFNI 282
            LP L H D Q FN+
Sbjct: 1027 LPELRHGDIQGFNV 1040


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,035
Number of Sequences: 438
Number of extensions: 2557
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)