Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30638
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    71   8e-14
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    30   0.19 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   4.0  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.2  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 71.3 bits (167), Expect = 8e-14
 Identities = 32/54 (59%), Positives = 42/54 (77%)
 Frame = -3

Query: 377 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAENRWELRTFE*TPA 216
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+   + +     P+
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPS 59



 Score = 48.4 bits (110), Expect = 7e-07
 Identities = 26/61 (42%), Positives = 36/61 (59%)
 Frame = -2

Query: 255 KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASI 76
           K M T ++RVD  LNK +W +G+RNVP          R+D++D A  L+T V  V VA+ 
Sbjct: 47  KHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANP 104

Query: 75  K 73
           K
Sbjct: 105 K 105


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +1

Query: 268 RISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAIVILSFVYRIQLRK 447
           R+    +G   L PT   R+ K   Y   T+S M  L  +S LGL + +      + LR 
Sbjct: 58  RVIAEIIGGIVLGPTVMGRIPKFLDYIFPTSS-MGPLNLVSNLGLVLFLFVIGMEVDLRV 116

Query: 448 ALCATQFRCGLTVYAVIFP 504
            +   +    +TV++++ P
Sbjct: 117 LVLNYKVTLLVTVFSIVIP 135


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 29  GVYSWLASTFSVCKPLID 82
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 368 INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 270
           INE VT +Y  N+   + G+G  ++A   +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,968
Number of Sequences: 5004
Number of extensions: 39915
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)