Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30638
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                       73   2e-13
08_02_1181 - 24985963-24986242,24987109-24987197                       71   8e-13
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     66   1e-11
01_03_0022 + 11724319-11725381,11725476-11725582                       29   2.3  
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481...    28   5.3  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/47 (70%), Positives = 39/47 (82%)
 Frame = -3

Query: 395 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 255
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQ 50



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
 Frame = -2

Query: 312 CWI*KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDD 133
           C   K  P + +   K   K MGT D+RVD +LNK +WS G+R+VP          RND+
Sbjct: 32  CTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRNDE 91

Query: 132 EDSAHKLFTLVTY--VPVASIKGLQTENVD 49
           ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 92  EDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
 Frame = -2

Query: 312 CWI*KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDD 133
           C   K  P + +   K   K MGT D+RVD +LNK +WS G+R+VP          RND+
Sbjct: 30  CTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDE 89

Query: 132 EDSAHKLFTLVTY--VPVASIKGLQTENVD 49
           ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 90  EDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119



 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 33/46 (71%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
 Frame = -3

Query: 389 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 255
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQ 48


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
 Frame = -2

Query: 300 KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSA 121
           K  P + +   K   K MGT DIR+D +LNK +W+ G+R+VP          RND+ED+ 
Sbjct: 51  KKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAK 110

Query: 120 HKLFTLVTY--VPVASIKGLQTENVD 49
            +L++LVT   +P   +KGL T+ V+
Sbjct: 111 EELYSLVTVAEIPAEGLKGLGTKVVE 136



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 16/53 (30%)
 Frame = -3

Query: 365 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAE 255
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQ 65


>01_03_0022 + 11724319-11725381,11725476-11725582
          Length = 389

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 328 CKLTVYSRVTTSFMADLPFLSPLGLAIVILSFVYRIQLRKALCATQFRC 474
           C+ T+Y  +  S +AD+P L    L  VI   V R   + A+ AT + C
Sbjct: 49  CEGTLYPELCLSTLADIPDLHTKSLPDVICGTVNR--TKDAVAATSYNC 95


>01_06_1656 +
           38946922-38947542,38947640-38947739,38948045-38948189,
           38948868-38948991,38949443-38949960,38950111-38950458,
           38950557-38950638,38951309-38951707,38951790-38951927,
           38952063-38952108,38952200-38952369
          Length = 896

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 335 NLHKRLHGVGFKKRAPRAIKEIRKFAENRWELR 237
           +LH++   V  K +    ++EI +F +NRW+++
Sbjct: 796 SLHQKFPNVS-KSQLKNKVREISEFVDNRWQVK 827


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,400
Number of Sequences: 37544
Number of extensions: 239551
Number of successful extensions: 430
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)