Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30638
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   1e-08
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  41   5e-04
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = -3

Query: 407 MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 294
           M K   ++KG+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806



 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 24/48 (50%), Positives = 33/48 (68%)
 Frame = -2

Query: 183 NVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 40
           NVP+         RN+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 802 NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = -2

Query: 183 NVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIKGLQTE 58
           NVP+         RN+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 371 AINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAENRWEL 240
           +++E V  EY  +LH   HG GF ++      E   +A + W L
Sbjct: 418 SMDEDVQVEYGADLHSAKHGSGFPRKGETHTSEEEFYANSAWNL 461


>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 383 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRK 264
           K K  INEV+T  Y     + L      KR  R IKE+ +
Sbjct: 213 KNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKELEE 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,312,929
Number of Sequences: 59808
Number of extensions: 296245
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)