Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30638
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...    70   1e-12
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)            69   3e-12
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)            69   3e-12

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
 Frame = -2

Query: 312 CWI*KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDD 133
           C   K  PK+ +   K   K+MGT D+RVD +LNK +WSKG+R  P          RNDD
Sbjct: 27  CTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDD 86

Query: 132 EDSAHKLFTLVTY--VPVASIKGLQTENVD 49
           ED+  + F+LVT   +P   + GL T+ ++
Sbjct: 87  EDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116



 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = -3

Query: 389 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 255
           E+KG+    EVVTREYT+NLH+RLH   FKK+AP+AIKEIRKFAE
Sbjct: 3   EKKGRK--EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAE 45


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
 Frame = -2

Query: 312 CWI*KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDD 133
           C   K  PK+ +   K   K MGT D+RVD +LNK +WSKG+R  P          RNDD
Sbjct: 27  CTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDD 86

Query: 132 EDSAHKLFTLVTY--VPVASIKGLQTENVD 49
           ED+  + F+LVT   +P   + GL T+ ++
Sbjct: 87  EDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116



 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 31/45 (68%), Positives = 38/45 (84%)
 Frame = -3

Query: 389 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAE 255
           E+KG+    EV+TREYT+NLH+RLH   FKK+AP+AIKEIRKFAE
Sbjct: 3   EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAE 45


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 31/42 (73%), Positives = 34/42 (80%)
 Frame = -3

Query: 383 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFA 258
           KGK    EVVTREYT+NLH+RLH   FKK+AP AIKEIRKFA
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFA 44



 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
 Frame = -2

Query: 312 CWI*KACPKSNQRNPKVR*KQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDD 133
           C   K  P + +   K   K MGT D+RVD +LNK +WSKG+R  P          RNDD
Sbjct: 27  CTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDD 86

Query: 132 EDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 40
           ED+  + F+LVT   +P   + GL T+ ++  +
Sbjct: 87  EDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,731,003
Number of Sequences: 28952
Number of extensions: 204275
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)