Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30637
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    33   0.030
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    29   0.86 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   3.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.6  
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    26   6.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   8.0  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.0  

>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 384 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTRSSSTREPSDPSCRIRHQ 563
           C++C    D+    C  ++ + R  CRCS ++  S   + +TRS STR    P C   ++
Sbjct: 14  CWICYEEYDKKL--CSLSNDSWRRPCRCSLIAHESCLISYITRSGSTR---CPQCLTAYR 68

Query: 564 VDRP--RRTW 587
           + +P   ++W
Sbjct: 69  IAKPPKEKSW 78


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 257 ERVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARSEFSCI*IFVVL 105
           E  S    SD +K +  + +N      P WR+    +A SE SC+ ++ +L
Sbjct: 311 ESESFCSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLL 361


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 188 YENFEITIKHF*IRRRDELAKRVRNRSLRSDFN 286
           Y+NF++ +  F + R++   K + N S  S FN
Sbjct: 380 YQNFDLYVSKFNVARKELSEKELFNNSFSSSFN 412


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 574 GRSTWCRIRHEGSLGSRVDEERVN 503
           G S WCR+ H+    S+ +  ++N
Sbjct: 518 GHSRWCRVIHKDGRNSKRESSKIN 541


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -1

Query: 483 CRTHLNIDISNAHCGPWRHIQDHSCLRAGC---IKNINHIAWLVP 358
           C   +N   S   CG   H+   SC+R  C   I+  N  AW  P
Sbjct: 200 CTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCP 244


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 272 EDYDYERVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARSEF 132
           E+ D     L  + + SKN++ + +    H++PL   + +  ARS+F
Sbjct: 224 EEEDLSTEFLTIMLNSSKNIVKIIKLGGTHIQPLLLKKCIEVARSKF 270


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 205  YFKIFIITSNLSGARVMFSVRVASSRVYEFLSSWFR 98
            + K+   T ++   R+ F   +     YE LSSW+R
Sbjct: 965  FTKVITKTFSIKSIRLQFLSLIIYEITYEQLSSWYR 1000


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 481 QDTFEHRHFERTLRSVETHPGPLLSEG 401
           QD  E + +  +++S  TH  PL++ G
Sbjct: 147 QDELERKEYNESMQSSVTHKRPLVTRG 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,584
Number of Sequences: 5004
Number of extensions: 54340
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)