Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30637
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    33   0.17 
11_06_0510 + 24420402-24422582                                         31   0.68 
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290...    30   2.1  
03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700     29   3.6  
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82...    28   6.3  
11_06_0348 - 22561589-22563656,22563788-22564602                       28   8.4  
03_04_0049 - 16814121-16814515,16815659-16815788,16815905-168159...    28   8.4  

>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -1

Query: 564 PGAEFGTRDHLARGSMKNALTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC-I 391
           PG EF     L        L+A+ S +NC + +  +IS  H G   H    + + AGC +
Sbjct: 706 PGHEFSELLVLDVEGQNLVLSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFV 765

Query: 390 KNINHIAWLVPRS*SVALSVPR 325
           + + H+    P+  +V  SV +
Sbjct: 766 RFLGHLTGFSPKDKAVDRSVEK 787


>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 378 D*CFLCSRPSDRSGPGCVSTDRNVRSKC-RCSNVSCSSHYDAQLTRSSSTR 527
           D CF  + P+D+   GC S   +  SKC RC   S S + DA+     S +
Sbjct: 504 DLCFYANHPADKDDDGCCSCSSS--SKCLRCLCSSSSGYPDAEARGRDSNK 552


>03_05_1160 +
           30826972-30828375,30828641-30828754,30828901-30829032,
           30830087-30830224
          Length = 595

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 390 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVS--CSSHYDAQLTRS--SSTREPS 536
           +C  P + S  G ++ D  + S+C CS  S   S+H DA    S  SS + PS
Sbjct: 347 MCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCASAASSNKNPS 399


>03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700
          Length = 813

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 617 YLTNYKNEWRPRPPRTIHLVPNSARGITWL 528
           +++  K EWRP   R+I L P  A+  TW+
Sbjct: 348 FMSPDKFEWRPYGSRSIALPPKEAKAGTWV 377


>02_01_0110 +
           819022-819264,819996-820761,820846-820920,821276-821445,
           821644-821742,821835-822134,822211-822318,822443-822514,
           822580-822666,822887-822958,823063-823152,823795-823902,
           824015-824083,824177-824242,824395-824418
          Length = 782

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 568 STWCRIRHEGSLGSRVDEERVNCAS 494
           S W R+ +  S G +V+ E +NC+S
Sbjct: 423 SDWTRLENYASTGEKVEVELINCSS 447


>11_06_0348 - 22561589-22563656,22563788-22564602
          Length = 960

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 677 LFIMAISI*FHESQNVLYQSYLTNYKNEWRPRPPRTIH 564
           L I+AI+  FH+  +  YQ  L +   +WR     TIH
Sbjct: 684 LKILAITWAFHQCNDKAYQQALLSSLGKWRQLKSLTIH 721


>03_04_0049 -
           16814121-16814515,16815659-16815788,16815905-16815963,
           16816610-16817102
          Length = 358

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 594 MASTSAS-DDPPGAEFGTRDHLARGSMKNALTARHSV 487
           ++ST+ +  DPP A+   +DH     ++NA T   SV
Sbjct: 171 LSSTNGNASDPPAADAAAQDHSVASMLRNASTLGDSV 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,580,404
Number of Sequences: 37544
Number of extensions: 356484
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)