Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30637
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) 33 0.30
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1) 29 2.8
SB_9897| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34) 28 6.5
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 28 6.5
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17) 28 6.5
SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18) 28 6.5
SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
Length = 444
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 451 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRVE 335
+T+R V+T P L + RLH H +HC L +R V+
Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTVQ 408
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 451 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRVE 335
+TLR V+T P L + R H+ H +HC +R V+
Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTVQ 248
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 451 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRVERSALRV 317
+T+R+V+T P L + R H+ +HC +R V+ S R+
Sbjct: 242 QTVRTVQTPPDRLCALYRFHQTDCAHCTDTTRQTVRTVQISPDRL 286
>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
Length = 616
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 217 MFYCYFKIFIITSNLSGARVMFSVRVASSRVYEFLSSWFR 98
+ +C K+F+I SNL ++ + ++SR S WF+
Sbjct: 147 LVFCLTKVFLIESNLPALDIVKNKIDSASRYLHVFSKWFQ 186
>SB_9897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 451 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRVERSALRVR 314
+T R+V+T P + RLH+ +HC +R V+ S R R
Sbjct: 267 QTARTVQTSPDRQRAMHRLHQTDSAHCTDLTRQTVRTVQTSPERQR 312
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 337 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS 504
Q G R E R + F QT ++L P++A+CV+ D + A+HT R+
Sbjct: 156 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRT 207
>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
Length = 524
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 451 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRVE 335
+T+R+V+T P L + R H+ +HC +R V+
Sbjct: 365 QTVRTVQTSPDRLCALYRFHQTDCAHCTVTTRQTVRSVQ 403
>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 337 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS 504
Q G R E R + F QT ++L P++A+CV+ D + A+HT R+
Sbjct: 65 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRT 116
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 299 HVTTSTNA*RGTLNATDHERGTSHAM 376
HVTT+TN TL T H+ TS A+
Sbjct: 1812 HVTTATNTRNATLTLTHHKTETSTAV 1837
>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
Length = 498
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 471 LNIDISNAHCGPWRHIQDHSCLRAGCIKN 385
L +D+ NA GPW I+ H C + C+ N
Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313
>SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)
Length = 550
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +3
Query: 399 RPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPR 578
R ++R G S RSK S V+ + + T + R S P C HQ D P
Sbjct: 63 RMNNRYGKELKSDKVRSRSKPAASQVTTLATENENTTDERAKR--SSPKC---HQCDGPH 117
Query: 579 RTWTPFIF 602
TW F F
Sbjct: 118 PTWRCFAF 125
>SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 337 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTR 501
Q G R E R + F QT ++L P++A+CV+ D + A+HT R
Sbjct: 24 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYR 74
>SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 438 PWRHIQDHSCLRAGCIKNI 382
PWR+ DH CL+ I N+
Sbjct: 5 PWRNAADHHCLKTAIIFNV 23
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,040,677
Number of Sequences: 59808
Number of extensions: 437010
Number of successful extensions: 1325
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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