Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30637
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50016-11|CAL22700.1|  157|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z50016-10|CAL22699.1|  264|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z50016-6|CAC42350.1|  448|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF151645-1|AAD42387.1|  264|Caenorhabditis elegans ionotropic GA...    31   1.1  
AF151644-1|AAD42386.1|  448|Caenorhabditis elegans ionotropic GA...    31   1.1  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    30   1.4  
AF067220-2|AAC16978.1|  588|Caenorhabditis elegans Hypothetical ...    29   2.5  
U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF000198-5|AAB53053.1|  381|Caenorhabditis elegans Hypothetical ...    28   7.5  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   9.9  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z50016-11|CAL22700.1|  157|Caenorhabditis elegans Hypothetical
           protein T21C12.1i protein.
          Length = 157

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 696 RQTNRFSVHYGHFDLVSRITKCFIPELFNEL 604
           +Q+NRF V + H D+VSR     +  LFN L
Sbjct: 98  KQSNRFCVSHSHIDIVSRAAFPLVFILFNTL 128


>Z50016-10|CAL22699.1|  264|Caenorhabditis elegans Hypothetical
           protein T21C12.1h protein.
          Length = 264

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 696 RQTNRFSVHYGHFDLVSRITKCFIPELFNEL 604
           +Q+NRF V + H D+VSR     +  LFN L
Sbjct: 205 KQSNRFCVSHSHIDIVSRAAFPLVFILFNTL 235


>Z50016-6|CAC42350.1|  448|Caenorhabditis elegans Hypothetical
           protein T21C12.1f protein.
          Length = 448

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 696 RQTNRFSVHYGHFDLVSRITKCFIPELFNEL 604
           +Q+NRF V + H D+VSR     +  LFN L
Sbjct: 389 KQSNRFCVSHSHIDIVSRAAFPLVFILFNTL 419


>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical protein
            T21C12.1a protein.
          Length = 1106

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 696  RQTNRFSVHYGHFDLVSRITKCFIPELFNEL 604
            +Q+NRF V + H D+VSR     +  LFN L
Sbjct: 1047 KQSNRFCVSHSHIDIVSRAAFPLVFILFNTL 1077


>AF151645-1|AAD42387.1|  264|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49Cshort protein.
          Length = 264

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 696 RQTNRFSVHYGHFDLVSRITKCFIPELFNEL 604
           +Q+NRF V + H D+VSR     +  LFN L
Sbjct: 205 KQSNRFCVSHSHIDIVSRAAFPLVFILFNTL 235


>AF151644-1|AAD42386.1|  448|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49C protein.
          Length = 448

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 696 RQTNRFSVHYGHFDLVSRITKCFIPELFNEL 604
           +Q+NRF V + H D+VSR     +  LFN L
Sbjct: 389 KQSNRFCVSHSHIDIVSRAAFPLVFILFNTL 419


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 278  LTEDYDYERVSLARLSDGSKNV 213
            LT DYDYE V++   SD SK++
Sbjct: 1426 LTNDYDYESVNILVFSDASKDI 1447


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 278  LTEDYDYERVSLARLSDGSKNV 213
            LT DYDYE V++   SD SK++
Sbjct: 1426 LTNDYDYESVNILVFSDASKDI 1447


>AF067220-2|AAC16978.1|  588|Caenorhabditis elegans Hypothetical
           protein C33E10.5 protein.
          Length = 588

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 591 ASTSASDDPPGAEFGTRDHLARGSMKNALTARHSVNCRTHLNIDISN 451
           ASTS  DD     F +  ++ +G++K  LT+  S NC    N D  N
Sbjct: 541 ASTSQQDDAQEQVFTSHKNVEKGAIKRELTS-PSTNCADSRNDDRKN 586


>U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical
           protein R11F4.3 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/60 (20%), Positives = 28/60 (46%)
 Frame = +3

Query: 402 PSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPRR 581
           P ++   GC +++  + + C C   +C+     Q  +SS  R+  +    +  Q+ + +R
Sbjct: 267 PGEKLTEGCATSEGGLVNYCICRGNTCNRPSLLQQAQSSGVRDSLEEQRLMEEQIQKSQR 326


>AF000198-5|AAB53053.1|  381|Caenorhabditis elegans Hypothetical
           protein T28F2.1 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 224 IRRRDELAKRVRNRSLRSDFN*KKQHVTTSTNA*RGTLNATDH 352
           IRR+DE   ++     R DF    QH  T++N    T+ A DH
Sbjct: 196 IRRKDEFRFKICVHIRRGDFLTDSQHAGTASNF---TIRAVDH 235


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +3

Query: 375 CD*CFLCSRPSD-RSGPGCVSTDRNVRSKC-----RCSNVSCSS 488
           C+ C   S   D  SGP C+  D     KC     +CS VSC S
Sbjct: 472 CEDCVNSSNCLDVESGPVCICDDGYFGQKCDQKHDKCSKVSCPS 515


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 414 SGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTRSSSTREPSDPSCR 551
           SG  C +T  + RS   C N  C S Y   +  S+S    S  +CR
Sbjct: 85  SGTYC-TTSYSCRSGETCMNNRCQSSYSNNMYNSNSQYSNSGSTCR 129


>AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical
           protein T23B12.6 protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 367 PRNVINVF-YAAGPQTGVVLDVSPRTAMCVRNVDVQMCPA 483
           PR++IN+  Y+ GP    +LDV     +C     +  CP+
Sbjct: 627 PRSLINLSNYSGGPTPQELLDVIDDNDICCSTPSLSRCPS 666


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,057
Number of Sequences: 27780
Number of extensions: 316050
Number of successful extensions: 876
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)