Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30637
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.057
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.53 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.7 bits (61), Expect = 0.057
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -1

Query: 564  PGAEFGTRDHLARGSMKNALTARHSVNCRTHLNIDISNAHCGPWRHIQDHSCLRAGCIKN 385
            PG+ + T D + RG++  ++ +  + + R H+  +++  HC P R        R G  + 
Sbjct: 1657 PGSNYNTCDRIKRGTVIRSIRSHSTWDPRRHMYEELN--HCAPNRRCPPPP--RMGSAEG 1712

Query: 384  INH 376
            ++H
Sbjct: 1713 LSH 1715


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 462 RCSNVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRP 575
           R +N   +S  D +L R+S ++ P  P C    ++D P
Sbjct: 540 RRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSP 577


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 143 AHAKHNARAREVRRDYENFEITIKHF 220
           AH   N+RA     DY     T+K+F
Sbjct: 127 AHGTGNSRANTYNFDYPQVPYTVKNF 152


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 471 NVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPRR 581
           N +  SH+D +  +S S  E S+   R R Q +R RR
Sbjct: 4   NTTNHSHHDERFRQSRS--EDSETGLRSRTQEERLRR 38


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 471 NVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPRR 581
           N +  SH+D +  +S S  E S+   R R Q +R RR
Sbjct: 4   NTTNHSHHDERFRQSRS--EDSETGLRSRTQEERLRR 38


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 471 NVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPRR 581
           N +  SH+D +  +S S  E S+   R R Q +R RR
Sbjct: 4   NTTNHSHHDERFRQSRS--EDSETGLRSRTQEERLRR 38


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 471 NVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPRR 581
           N +  SH+D +  +S S  E S+   R R Q +R RR
Sbjct: 4   NTTNHSHHDERFRQSRS--EDSETGLRSRTQEERLRR 38


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 471 NVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPRR 581
           N +  SH+D +  +S S  E S+   R R Q +R RR
Sbjct: 4   NTTNHSHHDERFRQSRS--EDSETGLRSRTQEERLRR 38


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 471 NVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPRR 581
           N +  SH+D +  +S S  E S+   R R Q +R RR
Sbjct: 4   NTTNHSHHDERFRQSRS--EDSETGLRSRTQEERLRR 38


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 471 NVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPRR 581
           N +  SH+D +  +S S  E S+   R R Q +R RR
Sbjct: 4   NTTNHSHHDERFRQSRS--EDSETGLRSRTQEERLRR 38


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 471 NVSCSSHYDAQLTRSSSTREPSDPSCRIRHQVDRPRR 581
           N +  SH+D +  +S S  E S+   R R Q +R RR
Sbjct: 4   NTTNHSHHDERFRQSRS--EDSETGLRSRTQEERLRR 38


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 206 LFQNFHNHVEPLWR 165
           LF N HNH++ +++
Sbjct: 51  LFDNVHNHIQNIFK 64


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 206 LFQNFHNHVEPLWR 165
           LF N HNH++ +++
Sbjct: 34  LFDNVHNHIQNIFK 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,376
Number of Sequences: 438
Number of extensions: 3621
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)