Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30637
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19870.1 68415.m02323 tRNA/rRNA methyltransferase (SpoU) fami...    30   1.7  
At2g28660.1 68415.m03484 copper-binding family protein similar t...    29   2.3  
At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein si...    29   4.0  
At2g46380.1 68415.m05773 hypothetical protein weak similarity to...    27   9.2  

>At2g19870.1 68415.m02323 tRNA/rRNA methyltransferase (SpoU) family
           protein similar to SP|P25270 Ribose methyltransferase
           PET56 (EC 2.1.1.-) {Saccharomyces cerevisiae}; contains
           Pfam profile PF00588: SpoU rRNA Methylase (RNA
           methyltransferase, TrmH) family
          Length = 589

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 313 YERVTRNAQRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVD 465
           +ERV + +++ G   +   ++ +N+     P  G+VLD SP   + V+ +D
Sbjct: 357 FERVLKISEKLGLNIKETSKHDLNMVADNRPHQGLVLDASPLELVKVKELD 407


>At2g28660.1 68415.m03484 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 265

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 405 SDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTRSSSTREPSD 539
           SDRS    +  DRNV S    S+ S SS + + +T  SS    +D
Sbjct: 137 SDRSKDLILYRDRNVTSSASSSSSSSSSSFSSSVTNVSSPAPSTD 181


>At5g42720.1 68418.m05203 glycosyl hydrolase family 17 protein
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 438

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 575 EADVDAIHFYSSLNSSGIKHFVIRETKSKWP 667
           +A VDA+  YS+LNS G K   I   ++ WP
Sbjct: 241 DAQVDAV--YSALNSMGFKDVEIMVAETGWP 269


>At2g46380.1 68415.m05773 hypothetical protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 732

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 513 SSSTREPSDPSCRIRHQVDRPRRTW 587
           S S+ E SD +  +RHQ D    TW
Sbjct: 67  SGSSEEESDSNASLRHQQDGQTETW 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,151,061
Number of Sequences: 28952
Number of extensions: 283923
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)