Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30635
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    89   6e-19
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.5  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.4  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.8  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   7.8  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
 Frame = -3

Query: 518 PNCWYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 339
           P   Y+ KVRAGRGFTL E++AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y 
Sbjct: 61  PTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYL 120

Query: 338 ARLILFP-KGKKVLKGEANE 282
           A LI+FP K  +  KG+A +
Sbjct: 121 AHLIVFPRKAGQPKKGDATD 140



 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 28/56 (50%), Positives = 35/56 (62%)
 Frame = -1

Query: 676 IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTV 509
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTI 63



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 23/62 (37%), Positives = 33/62 (53%)
 Frame = -2

Query: 270 AGYTASGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 91
           A  T    ++P+ Q A +  A+PITE+ KNF A+  L   R+ A+  G RA   K  AE 
Sbjct: 144 AEQTDVAAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRAEE 202

Query: 90  PD 85
            +
Sbjct: 203 AE 204


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 264 YTASGPLMPVQQPAPKSVARPITEDEKNFKAYQYLR 157
           Y  S P+ PVQ   P   A+P  ED    +  + LR
Sbjct: 429 YQPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLR 464


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 183 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 91
           N ++ ++LR A S A++VG   +R++   EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 484 VEDSLFVKLGPQD*TQYLPERLELL 410
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 448 PAALISRRVNPLPARTLVWYQQLGI 522
           P ALI+ +++ LP R+L+W  +  I
Sbjct: 241 PRALITVKLSQLPLRSLLWANESAI 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,461
Number of Sequences: 5004
Number of extensions: 48293
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)