Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30635
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 99 3e-21
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 98 7e-21
02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551... 32 0.37
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 4.6
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 4.6
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 6.0
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609... 28 8.0
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 99.1 bits (236), Expect = 3e-21
Identities = 47/85 (55%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = -3
Query: 506 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 327
Y+ K RAGRGFTL E++AAG+ FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L+
Sbjct: 65 YNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLV 124
Query: 326 LFP-KGKKVLKGEANEEERKLATQL 255
+FP + +KV G++ EE ATQ+
Sbjct: 125 IFPRRARKVKAGDSTPEELATATQV 149
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = -1
Query: 685 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTV 509
NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R PLRPIV+C T+
Sbjct: 5 NNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTL 63
Score = 34.7 bits (76), Expect = 0.070
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 252 GPLMPVQQPAPKSV-ARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 100
G MP+ + +SV +T+D K FKAY LR R + +G R KR +A
Sbjct: 151 GDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIGARQKRAAEA 202
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 97.9 bits (233), Expect = 7e-21
Identities = 46/85 (54%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = -3
Query: 506 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 327
Y+ K RAGRGFTL E++AAG+ +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L+
Sbjct: 65 YNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLV 124
Query: 326 LFP-KGKKVLKGEANEEERKLATQL 255
+FP + +KV G++ EE ATQ+
Sbjct: 125 IFPRRARKVKAGDSTAEELATATQV 149
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/59 (54%), Positives = 38/59 (64%)
Frame = -1
Query: 685 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTV 509
NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R PLRPIV+C T+
Sbjct: 5 NNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTL 63
>02_04_0453 +
23053621-23054167,23054867-23054958,23055085-23055149,
23058558-23059086
Length = 410
Score = 32.3 bits (70), Expect = 0.37
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = -3
Query: 638 C*NLV*PASSTIPQKAK*NKEG*GRSSTSCSWAVTSYSAMPNCWYHTKVRAGRGFTLREI 459
C ++ +S P KA+ + G GR+ +S W++ PN + H +R+ L
Sbjct: 317 CVEIILSSSLWGPHKAR-RRGGGGRAGSSHGWSIKFGIRRPNLFLHWLLRSSSRTDLCRH 375
Query: 458 RAAGLNPVFARTIGIAVDPRRRNK-SVESLQI 366
R L + T G+A + K +V SL++
Sbjct: 376 RRPTLEFIVLATAGVAEEEEETTKPAVASLRL 407
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 404 DLQQFQSFGQILGSILRP 457
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 404 DLQQFQSFGQILGSILRP 457
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 383 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 255
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>03_05_1150 -
30758981-30759778,30759970-30760729,30760823-30760920,
30761997-30762521
Length = 726
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 546 AAGRGATALAFFILF---CFLRYRRAGWLNQVLTNLCQSLWKCPLGI 677
++ RG T + FF++F F Y G+L +LT + W P I
Sbjct: 222 SSSRGPTRMRFFLIFFFASFAYYALPGYLLPILTFFSWACWAWPHSI 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,215,497
Number of Sequences: 37544
Number of extensions: 320008
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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