Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30635
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)              98   7e-21
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   34   0.12 
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)              28   6.2  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.2  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 50/89 (56%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
 Frame = -3

Query: 518 PNCWYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 339
           P   Y+TKVRAGRGFTL E++AAG+    A TIGIAVD RR+N+S ESLQ NVQR+KEY+
Sbjct: 62  PTFKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYK 121

Query: 338 ARLILFP-KGKKVLKGEANEEERKLATQL 255
           ++LI+FP K  K  +G++   +   A QL
Sbjct: 122 SKLIVFPRKANKPKQGDSEAADLANAVQL 150



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 34/58 (58%), Positives = 39/58 (67%)
 Frame = -1

Query: 685 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 512
           NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 6   NNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 252 GPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSI-AKLVGI 124
           GP+MP+ Q +    ARPITEDEK   + +    +  +  KLVG+
Sbjct: 152 GPVMPIPQESVPIKARPITEDEKKSASSRQCESSGEVKTKLVGL 195


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 416 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 258
           IA+  R    + +     + RI+E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
          Length = 91

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -3

Query: 431 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 261
           AR I +A+  RR   +  S+Q   +   EY  R     KG+KV KG    +ERK A+
Sbjct: 17  ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 376  DSTDLLRLRGSTAIPIVRANTGFNPAALISRRVNPLPARTLVWYQQLGIAL*DVTAQLQD 555
            D TDL  +RGS  + +   N   NP   ++ R     + +L   + L + + D      D
Sbjct: 1783 DRTDLFEVRGSKLVLVSSVNYEENPTINVTIRAADDGSPSLSKEEVLAVTVIDCNDAPSD 1842

Query: 556  VELRP 570
            V +RP
Sbjct: 1843 VIIRP 1847


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,028
Number of Sequences: 59808
Number of extensions: 353854
Number of successful extensions: 966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)