Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30635
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   100   2e-21
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    65   5e-11
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 49/89 (55%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
 Frame = -3

Query: 518 PNCWYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 339
           P   Y+TK R GRGF+L+E++AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+
Sbjct: 62  PQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYK 121

Query: 338 ARLILFP-KGKKVLKGEANEEERKLATQL 255
           A+LILFP K     KG+++ EE K+A QL
Sbjct: 122 AKLILFPKKASAPKKGDSSAEELKVAAQL 150



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 27/58 (46%), Positives = 34/58 (58%)
 Frame = -1

Query: 688 GNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCP 515
           GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP
Sbjct: 5   GNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCP 62


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 27/58 (46%), Positives = 34/58 (58%)
 Frame = -1

Query: 688 GNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCP 515
           GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP
Sbjct: 5   GNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCP 62



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 518 PNCWYHTKVRAGRGFTLREIRAAGLN 441
           P   Y+TK R GRGF+L+E++AA  N
Sbjct: 62  PQKRYNTKTRLGRGFSLQELKAAEEN 87


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +3

Query: 555 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 644
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,463
Number of Sequences: 27780
Number of extensions: 269304
Number of successful extensions: 679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)