Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30635
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    95   4e-20
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    95   4e-20
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            93   2e-19
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    92   4e-19
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    29   2.2  
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro...    29   2.9  
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...    29   3.8  
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...    29   3.8  
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    27   8.8  
At5g12280.1 68418.m01444 hypothetical protein                          27   8.8  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 45/85 (52%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = -3

Query: 506 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 327
           Y+ KVR G+GFTL E++AAG+    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L+
Sbjct: 64  YNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLV 123

Query: 326 LFP-KGKKVLKGEANEEERKLATQL 255
           +FP + +KV  G++  EE   ATQ+
Sbjct: 124 IFPRRARKVKAGDSTPEELANATQV 148



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 33/65 (50%), Positives = 38/65 (58%)
 Frame = -1

Query: 685 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVG 506
           NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R              PLRP+V     G
Sbjct: 4   NNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVH----G 59

Query: 505 TILKY 491
             LKY
Sbjct: 60  QTLKY 64



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 252 GPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 100
           G  +P+ +  P      +T + K+FKA+  +R  R+  +  G RAKR  +A
Sbjct: 150 GDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEA 200


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 45/85 (52%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = -3

Query: 506 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 327
           Y+ KVR G+GFTL E++AAG+    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L+
Sbjct: 64  YNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLV 123

Query: 326 LFP-KGKKVLKGEANEEERKLATQL 255
           +FP + +KV  G++  EE   ATQ+
Sbjct: 124 IFPRRARKVKAGDSTPEELANATQV 148



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 33/65 (50%), Positives = 38/65 (58%)
 Frame = -1

Query: 685 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVG 506
           NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R              PLRP+V     G
Sbjct: 4   NNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVH----G 59

Query: 505 TILKY 491
             LKY
Sbjct: 60  QTLKY 64



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 252 GPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 100
           G  +P+ +  P      +T + K+FKA+  +R  R+  +  G RAKR  +A
Sbjct: 150 GDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEA 200


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 44/85 (51%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
 Frame = -3

Query: 506 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 327
           Y+ KVRAG+GFTL E++ AG+    A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L+
Sbjct: 64  YNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123

Query: 326 LFP-KGKKVLKGEANEEERKLATQL 255
           +FP + ++V  G++  EE   ATQ+
Sbjct: 124 VFPRRSRQVKAGDSTPEELANATQV 148



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 31/65 (47%), Positives = 37/65 (56%)
 Frame = -1

Query: 685 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVG 506
           NN+IP+ HF K WQ +VKTWFNQPAR+ RR+  R              PLRP+V     G
Sbjct: 4   NNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVH----G 59

Query: 505 TILKY 491
             LKY
Sbjct: 60  QTLKY 64



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -2

Query: 252 GPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 100
           G  MP+           +T D K FKAY  +R  R+ A+  G RAKR  +A
Sbjct: 150 GDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGARAKRAAEA 200


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 43/87 (49%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
 Frame = -3

Query: 506 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 327
           Y+ KVRAG+GFTL E++AAG+    A TIGI+VD  R+N+S+E  Q NVQR+K Y+A+L+
Sbjct: 64  YNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLV 123

Query: 326 LFPKGKKVLK-GEANEEERKLATQLVV 249
           +FP+  + +K G++ ++E   ATQ+ V
Sbjct: 124 IFPRCARTVKVGDSAQQELANATQVQV 150



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 26/59 (44%), Positives = 34/59 (57%)
 Frame = -1

Query: 685 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTV 509
           NN+IPNGHF K W+ +VKT FNQPA + RR+  R              P+RP+V   T+
Sbjct: 4   NNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTL 62



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 243 MPVQQPAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 100
           MP+ +  P      +T D K F AY  +R      +  G+RAKR  +A
Sbjct: 153 MPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEA 200


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 561 ATALAFFILFCFLRYRRAGWLNQV 632
           A  L FFI FCF  YR +G+L  V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289


>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
           protein similar to oligopeptide transporter Opt1p
           [Candida albicans] GI:2367386; contains Pfam profile
           PF03169: OPT oligopeptide transporter protein
          Length = 766

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +3

Query: 582 ILFCFLRYRRAGWLNQVLTNLC----QSLWKCP 668
           ++ CF+    A WL + + N+C     S+W CP
Sbjct: 569 LISCFVYLTTAWWLMETIPNICDSVTNSVWTCP 601


>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 404 DLQQFQSFGQILGSILRP 457
           DL+  QS GQI+G +LRP
Sbjct: 52  DLKSLQSVGQIIGEVLRP 69


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 404 DLQQFQSFGQILGSILRP 457
           DL+  QS GQI+G +LRP
Sbjct: 52  DLKSLQSVGQIIGEVLRP 69


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 120 AKRLKDAAENPDDVTKAPTA 61
           AK L DA E PD VT+AP A
Sbjct: 658 AKELVDAFELPDHVTRAPIA 677


>At5g12280.1 68418.m01444 hypothetical protein
          Length = 419

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 386 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 288
           +V+SL  NV  +KE  +  I FP  K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,055,336
Number of Sequences: 28952
Number of extensions: 254575
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)