Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30634
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   103   3e-23
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   1.5  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   2.0  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   2.6  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.1  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   6.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.1  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   8.1  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  103 bits (246), Expect = 3e-23
 Identities = 55/90 (61%), Positives = 67/90 (74%), Gaps = 1/90 (1%)
 Frame = +1

Query: 1   KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 180
           KA  +APRP    +RP V+ PT+RY+ KVRAGRGFTL E++AAG++   A TIGI VD R
Sbjct: 42  KAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHR 100

Query: 181 RRNKSVESLQINVQRIKEYRARLIL-SRKA 267
           RRN+S ESLQ NV+RIK Y A LI+  RKA
Sbjct: 101 RRNRSEESLQRNVERIKVYLAHLIVFPRKA 130



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +3

Query: 255 FP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGAR 431
           FP K  +  KG+A +      T +   ++P+ Q A +  A+PITE+ KNF A+  L   R
Sbjct: 126 FPRKAGQPKKGDATDVSGAEQTDVAA-VLPITQEAVEE-AKPITEEAKNFNAFSTLSNER 183

Query: 432 SIAKLVGIRAKRLKDAAENPD 494
           + A+  G RA   K  AE  +
Sbjct: 184 AYARYAGARAAFQKKRAEEAE 204


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 240 SASHTFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 392
           SAS      KK  + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 459 SASKVEEPSKK--RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = -3

Query: 114  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSF 1
            T   +STG+Y  M    +   W S   T    C TWSY  S+
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSY 1256


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 396 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 488
           N ++ ++LR A S A++VG   +R++   EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 95  VEDSLFVKLGPQD*TQYLPERLELL 169
           +ED+LF +L   D T Y  +RLE+L
Sbjct: 95  LEDALFSQLDEFDDTAYREQRLEML 119


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 13  VAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREI 120
           +APRP       I  CPT ++   +RA  G    EI
Sbjct: 267 IAPRPHNSGHYTIEACPTSQFEAHLRAICGLPFSEI 302


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 252 TFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 350
           TFP  +  L GE+N     L + +RGPL P Q+
Sbjct: 609 TFPGNE--LYGESNPTTWGLWSMIRGPLAPYQK 639


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 357 PKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAE 485
           P     P  E+E      +YL   +S AK VG   ++L++A +
Sbjct: 161 PSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATK 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,256
Number of Sequences: 5004
Number of extensions: 40772
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)