Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30634
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   116   1e-26
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   115   3e-26
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003...    29   3.6  
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559...    29   3.6  
02_04_0147 + 20194244-20195717,20195953-20195969                       27   8.2  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  116 bits (279), Expect = 1e-26
 Identities = 53/92 (57%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
 Frame = +1

Query: 1   KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 180
           KA  + PRP +GPLRPIV+C T++Y+ K RAGRGFTL E++AAG+   FA TIGI+VD R
Sbjct: 41  KAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHR 100

Query: 181 RRNKSVESLQINVQRIKEYRARLIL-SRKAKR 273
           R+N+S+E LQ NVQR+K Y+A+L++  R+A++
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARK 132



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = +3

Query: 255 FPK-GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQYLRGA 428
           FP+  +KV  G++  EE   ATQ++G  MP+ +   +SV    +T+D K FKAY  LR  
Sbjct: 126 FPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVE 185

Query: 429 RSIAKLVGIRAKRLKDA 479
           R   + +G R KR  +A
Sbjct: 186 RMNQRHIGARQKRAAEA 202


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  115 bits (276), Expect = 3e-26
 Identities = 52/92 (56%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
 Frame = +1

Query: 1   KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 180
           KA  + PRP +GPLRPIV+C T++Y+ K RAGRGFTL E++AAG+   +A TIGI+VD R
Sbjct: 41  KAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHR 100

Query: 181 RRNKSVESLQINVQRIKEYRARLIL-SRKAKR 273
           R+N+S+E LQ NVQR+K Y+A+L++  R+A++
Sbjct: 101 RKNRSLEGLQANVQRLKTYKAKLVIFPRRARK 132



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = +3

Query: 255 FPK-GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDEKNFKAYQYLRGA 428
           FP+  +KV  G++  EE   ATQ++G  MP+ +   +SV    +T++ K FKAY  LR  
Sbjct: 126 FPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVE 185

Query: 429 RSIAKLVGIRAKRLKDA 479
           R   + VG R KR  +A
Sbjct: 186 RMNQRHVGARQKRAAEA 202


>06_03_0711 +
           23798998-23799106,23799838-23799957,23800181-23800317,
           23800418-23800579,23800707-23800793,23800872-23800958,
           23801317-23801454,23802023-23802214,23802287-23802385,
           23802490-23802564
          Length = 401

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 175 DLQQFQSFGQILGSILRP 122
           DL+  QS GQI+G +LRP
Sbjct: 54  DLKSLQSVGQIIGEVLRP 71


>02_01_0754 -
           5595813-5595887,5595973-5596071,5596136-5596327,
           5596992-5597129,5597415-5597501,5597583-5597669,
           5597795-5597956,5598089-5598225,5598483-5598602,
           5600668-5600773
          Length = 400

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 175 DLQQFQSFGQILGSILRP 122
           DL+  QS GQI+G +LRP
Sbjct: 53  DLKSLQSVGQIIGEVLRP 70


>02_04_0147 + 20194244-20195717,20195953-20195969
          Length = 496

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 51  YRT*RPSCRTWSYGLSF 1
           Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,882
Number of Sequences: 37544
Number of extensions: 271363
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)