Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30634
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 126 2e-29
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 28 4.8
SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3) 28 6.4
SB_36164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4) 28 6.4
SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7) 27 8.5
SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1) 27 8.5
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 126 bits (303), Expect = 2e-29
Identities = 61/92 (66%), Positives = 75/92 (81%), Gaps = 1/92 (1%)
Frame = +1
Query: 1 KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 180
KA +APRP AG LRPIVRCPT +Y+TKVRAGRGFTL E++AAG+ A TIGIAVD R
Sbjct: 42 KAAKIAPRPVAGSLRPIVRCPTFKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHR 101
Query: 181 RRNKSVESLQINVQRIKEYRARLIL-SRKAKR 273
R+N+S ESLQ NVQR+KEY+++LI+ RKA +
Sbjct: 102 RKNRSAESLQANVQRLKEYKSKLIVFPRKANK 133
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 228 KGIQSASHTFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 404
K +S FP K K +G++ + A QL+GP+MP+ Q + ARPITEDEK
Sbjct: 118 KEYKSKLIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVPIKARPITEDEKKSA 177
Query: 405 AYQYLRGARSI-AKLVGI 455
+ + + + KLVG+
Sbjct: 178 SSRQCESSGEVKTKLVGL 195
>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 430
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 179 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 54
+GS V ++T NP L++R N +P R +L+W++ G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418
>SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 750
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 219 SKNKGIQSASHTFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARP 377
+KNKG S KG+KVL + + E R+ + ++ P+ + P
Sbjct: 610 NKNKGGTSRGRVLSKGEKVLALQWSRESRQTERGIHQAKAYIEMKTPRQITLP 662
>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 201 IIANQCSKNKGIQSASHTFPKGKKVLKGEANEEERKLATQLRGPLMPVQQP 353
IIA+Q + +G SA H +K A+E R+ ++ P P +P
Sbjct: 492 IIASQMEEPQGSTSAQHLAESDEKAAGQTAHEPAREKVERITSPEPPATRP 542
>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
Length = 449
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 179 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 33
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226
>SB_36164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 175 PRRRNKSVESLQINVQRIKEYRARLILSRKAKRC*RVRPMKK 300
P R N S+ S I ++RI YRA L LS + ++ P+K+
Sbjct: 98 PYRSNLSLSSEFIPIERIYPYRANLSLSIEFIPIEKIYPIKR 139
>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
Length = 318
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 179 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 33
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 66 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116
>SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7)
Length = 154
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 179 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 54
+GS A V +T NP L++R N +P R +L+W++ +
Sbjct: 60 KGSWAALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEK 103
>SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1)
Length = 165
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 179 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 54
+GS V ++T NP L++R N +P R L+W++ G +
Sbjct: 110 KGSWVALTVESSTLANPNILLARIQNLMPGRKALLLWFKATGKK 153
>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 25 PAAGPLRPIVRCPTVR-YHTKVRA--GRGFTLREIRAAG 132
P P R + +R YHTK A GRG TL IRA G
Sbjct: 502 PLILPKRGHITTLVIRHYHTKKSAHQGRGITLSSIRAGG 540
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,395,554
Number of Sequences: 59808
Number of extensions: 292613
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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