Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30634
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   113   1e-25
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    63   2e-10
AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related...    33   0.20 
AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related ...    33   0.20 
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U13876-13|AAA21172.3|  370|Caenorhabditis elegans Prion-like-(q/...    27   9.7  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/88 (60%), Positives = 67/88 (76%)
 Frame = +1

Query: 1   KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 180
           KA  +APRP AG LR +VRCP  RY+TK R GRGF+L+E++AAG++   ARTIGIAVD R
Sbjct: 42  KAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVR 101

Query: 181 RRNKSVESLQINVQRIKEYRARLILSRK 264
           R NK+ E L+ N  R+KEY+A+LIL  K
Sbjct: 102 RTNKTAEGLKANADRLKEYKAKLILFPK 129



 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
 Frame = +3

Query: 255 FPKGKKV-LKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGAR 431
           FPK      KG+++ EE K+A QLRG ++P+         R +T+ E+  + ++ LR  R
Sbjct: 127 FPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKER 186

Query: 432 SIAKLVGIRAKRLKDAAE 485
           +  K  G R KR ++AAE
Sbjct: 187 ADKKYRGKREKRAREAAE 204


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/46 (60%), Positives = 35/46 (76%)
 Frame = +1

Query: 1   KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLN 138
           KA  +APRP AG LR +VRCP  RY+TK R GRGF+L+E++AA  N
Sbjct: 42  KAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAEEN 87


>AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           b protein.
          Length = 548

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 222 KNKGIQSASHTFPKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDE 392
           KN+G +++  T  K KK+ K +A+ ++++   + +G P  P Q P  K V   + E E
Sbjct: 201 KNRGNKASEETQKKPKKISKFKASRQQKEPENEQKGAPEPPAQAPPTKVVEEMMNELE 258


>AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           a protein.
          Length = 660

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 222 KNKGIQSASHTFPKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDE 392
           KN+G +++  T  K KK+ K +A+ ++++   + +G P  P Q P  K V   + E E
Sbjct: 201 KNRGNKASEETQKKPKKISKFKASRQQKEPENEQKGAPEPPAQAPPTKVVEEMMNELE 258


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +3

Query: 258 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDEKNFKAYQYLRGARS 434
           PKGKK  K  ++ E+++   + R     PV+          + EDEK   + +    ++ 
Sbjct: 43  PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102

Query: 435 IAKLVGIRAKRLKDAAENPDDVTK 506
             K  G + K  K   + PD   K
Sbjct: 103 SKKATGSKKKNKK--TKKPDGSEK 124


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 410 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 279
           IS E++ I +  SC   R   L  H W T +    TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 410 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 279
           IS E++ I +  SC   R   L  H W T +    TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 267  KKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 404
            K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 885  KSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 267  KKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 404
            K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 885  KSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 267  KKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 404
            K VLK     + +  A   +GPL+P  Q AP +V   IT+  +N K
Sbjct: 907  KSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 240 SASHTFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 359
           S + T   GK +     NEE+R+LA  LR  +     PAP
Sbjct: 198 SPNDTGHLGKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 240 SASHTFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 359
           S + T   GK +     NEE+R+LA  LR  +     PAP
Sbjct: 201 SPNDTGHLGKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240


>U13876-13|AAA21172.3|  370|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 46
           protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 288 ANEEERKLATQLRGPLMPVQQPAPKSVARP 377
           A + ++++  Q++ P  PVQQP P  +  P
Sbjct: 102 AQQPQQQVQQQVQQPQQPVQQPQPTPIRPP 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,401,262
Number of Sequences: 27780
Number of extensions: 227111
Number of successful extensions: 639
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)