Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30634
(581 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 107 5e-24
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 107 5e-24
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 106 9e-24
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 106 1e-23
At5g47070.1 68418.m05800 protein kinase, putative similar to pro... 32 0.24
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 32 0.32
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con... 29 1.7
At2g24680.1 68415.m02947 transcriptional factor B3 family protei... 29 1.7
At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly... 29 2.3
At1g62250.2 68414.m07023 expressed protein 29 2.3
At1g62250.1 68414.m07022 expressed protein 29 2.3
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 3.0
At4g32695.1 68417.m04654 hypothetical protein hypothetical prote... 29 3.0
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 3.0
At1g07330.1 68414.m00781 hypothetical protein 28 4.0
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 27 9.1
At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)... 27 9.1
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family... 27 9.1
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 107 bits (257), Expect = 5e-24
Identities = 49/92 (53%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
Frame = +1
Query: 1 KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 180
KA + PRP +GPLRP+V T++Y+ KVR G+GFTL E++AAG+ A TIGIAVD R
Sbjct: 40 KAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHR 99
Query: 181 RRNKSVESLQINVQRIKEYRARLIL-SRKAKR 273
R+N+S+E LQ NVQR+K Y+ +L++ R+A++
Sbjct: 100 RKNRSLEGLQTNVQRLKTYKTKLVIFPRRARK 131
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 FPK-GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGAR 431
FP+ +KV G++ EE ATQ++G +P+ + P +T + K+FKA+ +R R
Sbjct: 125 FPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLER 184
Query: 432 SIAKLVGIRAKRLKDA 479
+ + G RAKR +A
Sbjct: 185 TNKRHAGARAKRAAEA 200
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 107 bits (257), Expect = 5e-24
Identities = 49/92 (53%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
Frame = +1
Query: 1 KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 180
KA + PRP +GPLRP+V T++Y+ KVR G+GFTL E++AAG+ A TIGIAVD R
Sbjct: 40 KAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHR 99
Query: 181 RRNKSVESLQINVQRIKEYRARLIL-SRKAKR 273
R+N+S+E LQ NVQR+K Y+ +L++ R+A++
Sbjct: 100 RKNRSLEGLQTNVQRLKTYKTKLVIFPRRARK 131
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 FPK-GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGAR 431
FP+ +KV G++ EE ATQ++G +P+ + P +T + K+FKA+ +R R
Sbjct: 125 FPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLER 184
Query: 432 SIAKLVGIRAKRLKDA 479
+ + G RAKR +A
Sbjct: 185 TNKRHAGARAKRAAEA 200
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 106 bits (255), Expect = 9e-24
Identities = 48/91 (52%), Positives = 68/91 (74%)
Frame = +1
Query: 1 KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 180
KA + PRP +GPLRP+V T++Y+ KVRAG+GFTL E++ AG+ A TIGI+VD R
Sbjct: 40 KAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHR 99
Query: 181 RRNKSVESLQINVQRIKEYRARLILSRKAKR 273
R+N+S+E LQ NVQR+K Y+A+L++ + R
Sbjct: 100 RKNRSLEGLQSNVQRLKTYKAKLVVFPRRSR 130
Score = 48.0 bits (109), Expect = 5e-06
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 FPKGKKVLK-GEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGAR 431
FP+ + +K G++ EE ATQ++G MP+ +T D K FKAY +R R
Sbjct: 125 FPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLER 184
Query: 432 SIAKLVGIRAKRLKDA 479
+ A+ G RAKR +A
Sbjct: 185 TNARHAGARAKRAAEA 200
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 106 bits (254), Expect = 1e-23
Identities = 48/95 (50%), Positives = 68/95 (71%)
Frame = +1
Query: 1 KAKAVAPRPAAGPLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 180
KA + PRP AGP+RP+V T+ Y+ KVRAG+GFTL E++AAG+ A TIGI+VD
Sbjct: 40 KAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHH 99
Query: 181 RRNKSVESLQINVQRIKEYRARLILSRKAKRC*RV 285
R+N+S+E Q NVQR+K Y+A+L++ + R +V
Sbjct: 100 RKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKV 134
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 FPKGKKVLK-GEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQYLRGAR 431
FP+ + +K G++ ++E ATQ++ MP+ + P +T D K F AY +R
Sbjct: 125 FPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEG 184
Query: 432 SIAKLVGIRAKRLKDA 479
+ G+RAKR +A
Sbjct: 185 INKRHAGVRAKRAAEA 200
>At5g47070.1 68418.m05800 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 410
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 261 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFKAYQY 416
KGK++L+ A E + T P P+P+S+ TE E+N + + Y
Sbjct: 25 KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 155 VRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGR 21
+R GF+P A N L L W++ GH+ +G G A GR
Sbjct: 115 LRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGR 159
>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
contains Pfam PF00646: F-box domain; contains weak hit
to TIGRFAM TIGR01640 : F-box protein interaction domain;
weakly similar to self-incompatibility (S-) locus F-box
(GI:29420811) [Prunus mume]
Length = 391
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +2
Query: 125 PQD*TQYLPERLELL*IPVDATSLLNHCKSMFKE*RNTERVSYFPERQ 268
P D +++ ERL D SLLN CKS+ K+ R+T R F ERQ
Sbjct: 5 PYDVVEHILERL-------DVKSLLN-CKSVSKQWRSTIRCRAFQERQ 44
>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 851
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 213 QCSKNKGIQSASHTFPKGKKVLKGEANEEERK 308
+CSK+ +S S KGKK K +N EER+
Sbjct: 80 ECSKHSEKESISAVPSKGKKNRKARSNREERR 111
>At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly
identical to atranbp1b [Arabidopsis thaliana] GI:2058284
Length = 217
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +3
Query: 216 CSKNKGIQSASHTFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEK 395
C + +++ K K+V + E +EE K A+ G L + +S +P+ + E+
Sbjct: 139 CIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKESEKKPVEKAEE 198
Query: 396 NFKA 407
N K+
Sbjct: 199 NKKS 202
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 70 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 237
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 70 RYHTKVRAGRGFTLREIRAAGLNPVFARTIGIA-VDPRRRNKSVESLQINVQRIKEY 237
RY T + G G TL+E +AG+N A +G D R+ +++ + ++R++ Y
Sbjct: 98 RYRTVIGRGEGETLKEFISAGVN---AYALGCTDEDLRKELMAMKDSGLEIERMENY 151
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 175 DLQQFQSFGQILGSILRP 122
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At4g32695.1 68417.m04654 hypothetical protein hypothetical protein
yjbI, Bacillus subtilis, PIR2:A69844
Length = 412
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 204 IANQCSKNKGIQSASHTFPKGKKVLKGEANEEERKLA--TQLRGPL 335
IAN +KG+ + P+GKKVL E N R ++ + +R P+
Sbjct: 316 IANNAQADKGLIGKMYPEPEGKKVLLCEENRGVRSVSMISNMRKPV 361
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 175 DLQQFQSFGQILGSILRP 122
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g07330.1 68414.m00781 hypothetical protein
Length = 685
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 213 QCSKNKGIQSASHTFPKGKKVLKGEANEEERKLATQL 323
Q N G+ H KGK + +GE N+ E + T++
Sbjct: 310 QQGSNDGLVGEKHPVMKGKDLTRGEVNDMESEHMTEI 346
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 106 TLREIRAAGLNPVFARTIGIAVDPR 180
T E+RA G+ VFA I + DPR
Sbjct: 158 TALEVRATGIQYVFAPCIAVCRDPR 182
>At2g37260.1 68415.m04571 WRKY family transcription factor (TTG2)
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 349
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 174 IYSNSNRSGKYWVQSCGPNFTKSESSTGAYFSMVPNSWASH 52
+ ++R+G VQ P+FT+SE+STG S+ +W +
Sbjct: 54 VSQGTHRAGPNLVQKV-PSFTESETSTGDRSSVDGYNWRKY 93
>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
protein (ROS1) similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1393
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +3
Query: 207 ANQCSKNKGIQSASHT---FPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARP 377
+NQ S N S F K+ K + E +Q G ++ Q+P K +
Sbjct: 789 SNQVSPNMSPGDCSSEIKGFQSMKEPTKSSVDSSEPGCCSQQDGDVLSCQKPTLKEKGKK 848
Query: 378 ITEDEKNFKAYQYLRGARSIAKLVGIRAK 464
+ ++EK KA+ + R GIR K
Sbjct: 849 VLKEEK--KAFDWDCLRREAQARAGIREK 875
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,909,860
Number of Sequences: 28952
Number of extensions: 215290
Number of successful extensions: 588
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -