Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30633
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   116   1e-27
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   114   4e-27
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.0  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   3.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   7.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   7.1  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    24   7.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   7.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    23   9.4  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  116 bits (278), Expect = 1e-27
 Identities = 50/82 (60%), Positives = 58/82 (70%)
 Frame = +2

Query: 2   KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 181
           KGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA         
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62

Query: 182 XMRHLKIVRRRFRNGFKEGKPT 247
            M +LK V R F+NGF+ GKPT
Sbjct: 63  RMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  114 bits (274), Expect = 4e-27
 Identities = 49/81 (60%), Positives = 57/81 (70%)
 Frame = +2

Query: 2   KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 181
           KGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA         
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62

Query: 182 XMRHLKIVRRRFRNGFKEGKP 244
            M +LK V R F+NGF+ GKP
Sbjct: 63  RMSYLKKVHRSFKNGFRSGKP 83


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 204 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 91
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 32  NKTHTLCRRCGRSSYHIQKSKCAQCGYP 115
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 100 PMWISCSKITILPLVSEG*AQEDYW 174
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 23   KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 115
            KR N    L  R       +Q ++C  CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 2   KGTSSFGKRRNKTHTLCRRCGRSS 73
           KGTS     R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 95  ILIFECDMTIYHIFCITYGSYFGAYRSLR 9
           +LI+ CD  +++  CI + S +  + S++
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVK 239


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   VPQASVSAEIRPIRYAEDVVDRHITF 83
           +PQ S+ +      Y ED++D +++F
Sbjct: 704 IPQGSILSSFLCHFYMEDLIDEYLSF 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,239,656
Number of Sequences: 5004
Number of extensions: 21965
Number of successful extensions: 47
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)