Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30633
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 119 7e-28
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 119 7e-28
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 118 9e-28
01_06_0209 - 27549615-27550246,27550358-27550452,27553290-275535... 27 2.9
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788 27 3.8
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 3.8
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292 27 5.0
05_07_0115 + 27783170-27783331,27783510-27783705,27783825-27784411 26 8.7
03_02_0347 - 7676510-7677832 26 8.7
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 119 bits (286), Expect = 7e-28
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +2
Query: 2 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 181
KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 24 KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 83
Query: 182 XMRHLKIVRRRFRNGFKEGKPTPPRR 259
MR+++ V RRF++ F+EG PR+
Sbjct: 84 RMRYMRHVPRRFKSNFREGTEATPRK 109
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 119 bits (286), Expect = 7e-28
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +2
Query: 2 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 181
KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 3 KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 62
Query: 182 XMRHLKIVRRRFRNGFKEGKPTPPRR 259
MR+++ V RRF++ F+EG PR+
Sbjct: 63 RMRYMRHVPRRFKSNFREGTEATPRK 88
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 118 bits (285), Expect = 9e-28
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +2
Query: 2 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 181
KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 3 KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 62
Query: 182 XMRHLKIVRRRFRNGFKEGKPTPPRR 259
MR+L+ V +RF++ F+EG PR+
Sbjct: 63 RMRYLRHVPKRFKSNFREGTEAAPRK 88
>01_06_0209 -
27549615-27550246,27550358-27550452,27553290-27553507,
27553590-27553757
Length = 370
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 198 RLSGGASVMVL--KKGNQRRPEGCSFVMNQYVL 290
+L G ++VL G QR+PE ++VM+QY L
Sbjct: 214 KLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHL 246
>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
Length = 326
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 109 ISCSKITILPLVSEG*AQEDYWNW--PHASFEDC 204
I+ +T + +S + +D W W PH +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 20 GKRRNKTHTLCRRCGRSSYHIQKSK----CAQCGYPAAK 124
G+ + K T CR CG + K CA+CG+P K
Sbjct: 9 GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCK 46
>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
Length = 222
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 8 TSSFGKRRNKTHTLCRRCGRSSYHIQKS 91
T +FG K HT CR CG +S++ +S
Sbjct: 26 TYTFGTHTAK-HTFCRVCGITSFYTPRS 52
>05_07_0115 + 27783170-27783331,27783510-27783705,27783825-27784411
Length = 314
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 219 VMVLKKGNQRRPEGCSFVMNQYVL 290
V+ G QR+PE ++VM+QY L
Sbjct: 183 VLYTNYGKQRKPEKTNWVMHQYHL 206
>03_02_0347 - 7676510-7677832
Length = 440
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 131 IVILLQDIHIGRILIFECDMTIYHIFCIT 45
++ LL+ + IGR+ +++ D + H F T
Sbjct: 53 VLPLLEGLGIGRVRLYDADPAVLHAFAKT 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,415,435
Number of Sequences: 37544
Number of extensions: 153508
Number of successful extensions: 383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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