Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30633
(336 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 1e-04
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 28 2.2
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1) 27 3.8
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 26 6.6
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 26 6.6
SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26) 26 6.6
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 26 6.6
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 26 6.6
SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_19925| Best HMM Match : TUDOR (HMM E-Value=2) 26 8.7
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 137 HWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG 238
+WS+KA MRHLK+V RRF+NGF+EG
Sbjct: 2 NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEG 35
>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 819
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 80 CDMTIYHIFCITYGSYFGA 24
CD +IYHI+ + Y ++GA
Sbjct: 355 CDSSIYHIYRLKYAVHYGA 373
>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
Length = 364
Score = 27.1 bits (57), Expect = 3.8
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +1
Query: 106 WISCSKITILPLVSEG*AQEDYWNWPHASF 195
W++C K+ +LP+ ++ Y W + F
Sbjct: 136 WVNCDKVRLLPMRADEVGARVYARWTNGQF 165
>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 27.1 bits (57), Expect = 3.8
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +1
Query: 106 WISCSKITILPLVSEG*AQEDYWNWPHASF 195
W++C K+ +LP+ ++ Y W + F
Sbjct: 297 WVNCDKVRLLPMRADEVGARVYARWTNGQF 326
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 145
R NK C CG S QKS C G + + HW+
Sbjct: 217 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 257
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 145
R NK C CG S QKS C G + + HW+
Sbjct: 43 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 83
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 145
R NK C CG S QKS C G + + HW+
Sbjct: 218 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 258
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 145
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_46143| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
Length = 245
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 145
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 145
R NK C CG S QKS C G + + HW+
Sbjct: 135 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 175
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 145
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQIQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 RRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKL-RSYHWS 145
R NK C CG S QKS C G + + HW+
Sbjct: 204 RENKQVQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWA 244
>SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 45 RYAEDVVDRHITFKNQNAPNVDILQQNYDPTTGQ*RLSAGRLLELAAC 188
+Y +D D TFK+ ++IL + T G ++ AG+ E A C
Sbjct: 423 KYQKDKADHTHTFKHSAGLPLEILAKLCTKTVGSPQIPAGKYTE-AGC 469
>SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 272 DEATAFWAALVSLL*NHYGSAS*QSSNDACGQFQ*SSCA*PS 147
+E A+W + + ++G A+ S N +CG SSCA PS
Sbjct: 256 EEGYAWWVSRDNANMTYWGGATPGSHNCSCGMT--SSCASPS 295
>SB_19925| Best HMM Match : TUDOR (HMM E-Value=2)
Length = 263
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +1
Query: 106 WISCSKITILPLVSEG*AQEDYWNWPHASF 195
W++C K+ +LP+ + Y W + F
Sbjct: 93 WVNCDKVRLLPMRVDEVGARVYARWTNGQF 122
>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +2
Query: 20 GKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMR-HL 196
G R KT +R R + QK CGY + RSY S + R +
Sbjct: 31 GAARAKTLAEKQRRNRLATAAQKCSTFTCGYKRSYKRSYKRSYERSYKRGYERSYKRGYK 90
Query: 197 KIVRRRFRNGFKEG 238
+ R ++ G++ G
Sbjct: 91 RSYERSYKRGYERG 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,471
Number of Sequences: 59808
Number of extensions: 167668
Number of successful extensions: 689
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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