Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30633
(336 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi... 117 2e-27
At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi... 117 2e-27
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo... 113 2e-26
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai... 29 1.0
At1g62220.1 68414.m07018 expressed protein 28 1.3
At1g58210.1 68414.m06610 kinase interacting family protein simil... 28 1.8
At5g16940.1 68418.m01985 expressed protein contains Pfam profile... 27 2.4
At4g00450.1 68417.m00062 expressed protein 27 4.1
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 27 4.1
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 27 4.1
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 27 4.1
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 24 4.4
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 26 5.4
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ... 26 5.4
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 26 5.4
At4g28500.1 68417.m04077 no apical meristem (NAM) family protein... 26 7.2
>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
Length = 95
Score = 117 bits (282), Expect = 2e-27
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +2
Query: 2 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 181
KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 3 KGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTG 62
Query: 182 XMRHLKIVRRRFRNGFKEGKPTPPR 256
MR+L+ V RRF+ GF+EG PR
Sbjct: 63 RMRYLRNVPRRFKTGFREGTEAKPR 87
>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
to SP:Q43292 from [Arabidopsis thaliana]
Length = 95
Score = 117 bits (282), Expect = 2e-27
Identities = 51/85 (60%), Positives = 62/85 (72%)
Frame = +2
Query: 2 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 181
KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 3 KGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTG 62
Query: 182 XMRHLKIVRRRFRNGFKEGKPTPPR 256
MR+L+ V RRF+ GF+EG PR
Sbjct: 63 RMRYLRNVPRRFKTGFREGTEAKPR 87
>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
identical to GB:Q43292
Length = 95
Score = 113 bits (273), Expect = 2e-26
Identities = 50/85 (58%), Positives = 61/85 (71%)
Frame = +2
Query: 2 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 181
KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 3 KGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTG 62
Query: 182 XMRHLKIVRRRFRNGFKEGKPTPPR 256
MR+L+ V RRF+ F+EG PR
Sbjct: 63 RMRYLRNVPRRFKTCFREGTQATPR 87
>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain
Length = 215
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 44 TLCRRCGRSSYHIQK-SKCAQCGY 112
T C RCG +YH Q + C CG+
Sbjct: 186 TSCSRCGLITYHNQTGTSCCSCGF 209
>At1g62220.1 68414.m07018 expressed protein
Length = 153
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/70 (24%), Positives = 28/70 (40%)
Frame = +3
Query: 51 AEDVVDRHITFKNQNAPNVDILQQNYDPTTGQ*RLSAGRLLELAACVI*RLSGGASVMVL 230
+ DV F N P+ + + Y T+GQ ++ GR +++ G A V
Sbjct: 58 SSDVYSSATGFNNPKGPDANAYENGYTSTSGQ-VIAKGRKARVSSASASTAKGDAKAAVT 116
Query: 231 KKGNQRRPEG 260
+K R G
Sbjct: 117 RKAAAARANG 126
>At1g58210.1 68414.m06610 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) {Petunia
integrifolia}
Length = 1246
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 201 LSGGASVMVLKKGNQRRPEGCSFV 272
+SG V V KK N+RR GCS+V
Sbjct: 261 MSGKRVVTVSKKKNRRRSFGCSYV 284
>At5g16940.1 68418.m01985 expressed protein contains Pfam profile
PF04828: Protein of unknown function (DUF636)
Length = 135
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 8 TSSFGKRRNKTHTLCRRCGRSSYHIQKS 91
T +FG K HT C+ CG +S++I +S
Sbjct: 64 TYTFGTHTAK-HTFCKVCGITSFYIPRS 90
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 50 CRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVK 151
CRR R + +KS C Q P A +W +K
Sbjct: 788 CRRAKRPKMNDEKSSCYQGNSPIASDEEDNWWIK 821
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Frame = +2
Query: 32 NKTHT-LCRRCGRSS---YHIQKSKCAQCG 109
NKT LC CGR YH KC CG
Sbjct: 219 NKTQVILCNDCGRKGNAPYHWLYHKCTTCG 248
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 8 TSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQC 106
T+S +R+ K + C RCG++ + K C C
Sbjct: 162 TASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 8 TSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQC 106
T+S +R+ K + C RCG++ + K C C
Sbjct: 162 TASTKRRKKKKKSECYRCGKAKWE-NKETCIVC 193
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 24.2 bits (50), Expect(2) = 4.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 57 DVVDRHITFKNQNAPNVDILQ 119
D+ RHI+FK + P+V I Q
Sbjct: 1047 DIELRHISFKYPSRPDVQIFQ 1067
Score = 20.6 bits (41), Expect(2) = 4.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 105 VDILQQNYDPTTGQ 146
+ +LQ+ YDP +GQ
Sbjct: 1093 IALLQRFYDPDSGQ 1106
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 23 KRRNKTHTLCRRCGRSSYHI----QKSKCAQCG 109
K +K H +C RC +S+ + K C QCG
Sbjct: 151 KGYHKRHRVCLRCATASFVVLDGENKRYCQQCG 183
>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 801
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 23 KRRNKTHTLCRRCGRSSYHI----QKSKCAQCG 109
K +K H +C RC +S+ + K C QCG
Sbjct: 151 KGYHKRHRVCLRCATASFVVLDGENKRYCQQCG 183
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 41 HTLCRRCGRSSYHIQKSKCAQCG 109
H C++C + S I+ KC CG
Sbjct: 348 HLFCQQCIQRSLEIRHRKCPGCG 370
>At4g28500.1 68417.m04077 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 305
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 198 RLSGGASVMVL--KKGNQRRPEGCSFVMNQYVL 290
R+ G ++VL G Q++PE ++VM+QY L
Sbjct: 168 RVRGYKKILVLYTNYGKQKKPEKTNWVMHQYHL 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,561,936
Number of Sequences: 28952
Number of extensions: 118084
Number of successful extensions: 284
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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