Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30632
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    57   2e-09
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    35   0.014
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    34   0.025
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    34   0.025
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    31   0.18 
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    28   1.2  
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    28   1.6  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   3.8  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
 Frame = +1

Query: 82  KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRL 258
           KM   +N+ + V  +D RTF+G   AFD  MNL+L DC+E+R IK +N    +  EEKR+
Sbjct: 5   KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 231 NCRQRRKKTLGFVLLRGENIVSLTI 305
           N     K+ LG V+LRGE IVSL++
Sbjct: 56  NSVYEEKRMLGLVILRGEFIVSLSV 80


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 109 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
           V V L+  R   G   A+D+H+N++LGD EE   I        D+  K +
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTI 71


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 106 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
           RV+VI  D R  +G+ K FD   NLIL D  E
Sbjct: 10  RVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 61  MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
           MTI     + + I   + VI++  R F GT   FD ++N++L D  E+  +     K ++
Sbjct: 3   MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 85  MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
           + ++ + R++      R   G  K FD+ MNL+L D EE
Sbjct: 28  LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 58  KMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNS 228
           + + G  + +QQ +    +V++  ++++  +   KAFD+H N++L + +E    K + +
Sbjct: 24  EFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTA 82


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 85  MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
           +QQH    + +  Q      G  + FD+ MN++L D  +   + +KN+K
Sbjct: 20  LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQ---VDAKNNK 65


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 569 QEELPSFLEEGHPSWGLLAFGRSRKLTTISWC 474
           +E+ P   E+G P    +  G + +++  SWC
Sbjct: 360 EEQTPEDAEDGSPELLFMHGGHTNRISEFSWC 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,508
Number of Sequences: 5004
Number of extensions: 44768
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)