Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30632
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0479 + 3606663-3607448 85 6e-17
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 36 0.034
06_03_1120 - 27765613-27765963 34 0.10
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 32 0.56
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 31 0.74
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 31 1.3
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 30 1.7
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619 30 1.7
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 30 1.7
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 30 2.3
02_05_0887 + 32516255-32517292 29 5.2
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 28 9.1
>07_01_0479 + 3606663-3607448
Length = 261
Score = 85.0 bits (201), Expect = 6e-17
Identities = 40/67 (59%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNSK-T 234
M+ K +KM Q +NYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ SK+SK T
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTT 60
Query: 235 ADREEKR 255
+REE+R
Sbjct: 61 GEREERR 67
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI 305
+ ++TLG +LLRGE +VS+T+
Sbjct: 63 REERRTLGLLLLRGEEVVSMTV 84
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 35.9 bits (79), Expect = 0.034
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ R+ V L+ R G A+D+H+N+ILGD EE
Sbjct: 27 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 61
>06_03_1120 - 27765613-27765963
Length = 116
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +1
Query: 82 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR---KIKSKNSKTADREEK 252
K+++ + R+ V + D R F+G F DK N++L D E+R + +S +S ++ E+
Sbjct: 24 KLRKMLFRRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTSARRRSPSSPSSSPAEQ 83
Query: 253 R 255
R
Sbjct: 84 R 84
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 31.9 bits (69), Expect = 0.56
Identities = 11/44 (25%), Positives = 29/44 (65%)
Frame = +1
Query: 70 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
G+ ++++++ ++++ L +R +GT + FD+ MNL++ + E
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE 48
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ ++ + VI D R +GT + FD+ N+IL + E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
N +V + ++++ +G +AFD+H N++L E R++ ++ KT ++K L
Sbjct: 31 NTQVLINCRNNKKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 80
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 85 MQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR 243
M Q I R+++ L Q G FD++MNL+L D EE +K K+ R
Sbjct: 10 MTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI-NVKKDTRKSLGR 63
>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
Length = 398
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 88 QQHINYRVRVILQDSRTFIGTFKAFDKHMN 177
+Q++N + R + D +FIG++K KH+N
Sbjct: 152 RQYLNRKKRACMHDGCSFIGSYKELCKHVN 181
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 106 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRL 258
+V + Q+++ +G +AFD H N++L E R++ ++ KT ++K L
Sbjct: 383 KVLINCQNNKKLLGRVRAFDSHCNMVL---ENVREMWTEVPKTGKGKKKAL 430
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
I ++ VI++ + +GT FD ++N++L D E+
Sbjct: 88 IGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEY 123
>02_05_0887 + 32516255-32517292
Length = 345
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 88 QQHINYRVRVILQDSRTFIGTFKAFDKHM 174
+ ++N + R +QD +F+GT+K KH+
Sbjct: 149 RSYLNGKRRTCMQDGCSFVGTYKELRKHV 177
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 52 SDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
+D+M + + + + I V D+R + D H++ + + EEF KI K +
Sbjct: 463 TDEM-VARLDSLDVEIGNHVSRCKADARLMKDELEKKDHHLSTVEKESEEFLKISEKKLE 521
Query: 232 TADRE 246
A RE
Sbjct: 522 DAKRE 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,958
Number of Sequences: 37544
Number of extensions: 271735
Number of successful extensions: 870
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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