Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30632
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18) 106 2e-23
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13) 33 0.25
SB_526| Best HMM Match : GRP (HMM E-Value=8.5) 31 1.00
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15) 30 2.3
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 28 7.0
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_7168| Best HMM Match : Death (HMM E-Value=1.9e-06) 28 9.3
>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
Length = 327
Score = 106 bits (254), Expect = 2e-23
Identities = 48/67 (71%), Positives = 56/67 (83%)
Frame = +1
Query: 58 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 237
K TIGK++KM HINYR+R LQD R FIGTF AFDKHMN+ILGDC+EFRKIK K+SK
Sbjct: 23 KPTIGKSSKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQ 82
Query: 238 DREEKRL 258
+REEKR+
Sbjct: 83 EREEKRV 89
Score = 31.1 bits (67), Expect = 1.00
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 240 QRRKKTLGFVLLRGENIVSLTI 305
+ K+ LG VLLRGE++VS+T+
Sbjct: 84 REEKRVLGLVLLRGEHLVSMTV 105
>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +1
Query: 73 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
+ +++ +N +RV + D RT IG+F DK N+ILG C+EF
Sbjct: 29 QRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEF 72
>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
Length = 75
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
++ R+ V +++ R G A+D+H+N+IL D EE
Sbjct: 24 LDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEE 58
>SB_526| Best HMM Match : GRP (HMM E-Value=8.5)
Length = 149
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 526 HDGWPSSRNDGSSSWHGSWWAKT-GSSRNAT 615
+DGW ++ DG ++ +G W T G+ RNAT
Sbjct: 85 YDGWNATNGDGWNATNGDGWNGTNGNGRNAT 115
>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
Length = 443
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 231
N +V + +++R + KAFD+H N++L + +E K+ K
Sbjct: 29 NTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGK 72
>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 37 YLPNHSDKMTIGKNNKMQQHINY--RVRVILQDSR 135
++P H+ M IGK +M + I + RVR I+ SR
Sbjct: 334 FIPEHAMGMVIGKKGRMLEEIKHKTRVRPIIDKSR 368
>SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 197 KNSEKLNLKIVKLQTEKKK 253
K KLN+K+ KL+TEKKK
Sbjct: 34 KEVRKLNIKVEKLKTEKKK 52
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 538 PSSRNDGSSSWHGSWWAKTGSSRNATLL 621
PSS SS+W G+ K + RNAT L
Sbjct: 1785 PSSPTSASSNWAGTGVPKPSTRRNATFL 1812
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 538 PSSRNDGSSSWHGSWWAKTGSSRNATLL 621
PSS SS+W G+ K + RNAT L
Sbjct: 1571 PSSPTSASSNWAGTGVPKPSTRRNATFL 1598
>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 741 QHVHHSTNFMFIHKIRGYSQLLIQHCF 661
QH+H S N+ F H I+ + + + F
Sbjct: 195 QHLHKSKNWYFAHNIKSFKNTFVYNTF 221
>SB_7168| Best HMM Match : Death (HMM E-Value=1.9e-06)
Length = 206
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 510 WEEQKVDH--DFLVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQH 382
WEE+ D D LV + +M RL + QDL E + P + Q H
Sbjct: 116 WEERGHDFGMDRLVCILRDMGRLDVVQDLGKKECIHPSELCSQHH 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,799,659
Number of Sequences: 59808
Number of extensions: 327973
Number of successful extensions: 640
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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