Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30632
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 101 4e-22
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 34 0.094
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 34 0.094
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 34 0.12
Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 31 0.66
U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical pr... 31 0.66
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 4.7
AF068720-8|AAM15583.1| 142|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 101 bits (243), Expect = 4e-22
Identities = 44/66 (66%), Positives = 53/66 (80%)
Frame = +1
Query: 61 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 240
MTI KNNKM H+NYR+++ILQD RTFIG FKAFDKHMN++L +CEE R+IK K K D
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60
Query: 241 REEKRL 258
EEKR+
Sbjct: 61 GEEKRI 66
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 249 KKTLGFVLLRGENIVSLTI 305
K+ LG VL+RGE+IVS+T+
Sbjct: 64 KRILGLVLVRGEHIVSMTV 82
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 34.3 bits (75), Expect = 0.094
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRLWV 264
+ + ++ +RV Q R G + FD+ +N++L DC E+ + S D E ++L +
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGD-ETRQLGL 74
Query: 265 L 267
+
Sbjct: 75 I 75
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRLWVL 267
++ RV V +++ R G +AFD+H+N++L + EE R++ + ++ KR+ +
Sbjct: 25 LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKRVVPM 84
Query: 268 FF 273
F
Sbjct: 85 LF 86
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 85 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
+ ++N V V+ D R +G K FD+ +NL++ D E
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE 43
>Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical
protein C52E4.3 protein.
Length = 118
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +1
Query: 100 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
N++V + ++++ +G KAFD+H N++L + +E
Sbjct: 39 NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 72
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 31.5 bits (68), Expect = 0.66
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 97 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 204
I ++ VI+++ + +GT FD ++N++L D E+
Sbjct: 22 IGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEY 57
>U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical
protein C49H3.4 protein.
Length = 223
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 88 QQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 201
Q+ I RVR ++ R F G FD+H NL++ D E
Sbjct: 120 QKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTE 157
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 441 RGVGGPSQQHMAPGNRGQLSAPPKCEEAP 527
RG GP Q PG+ G +P CE P
Sbjct: 249 RGPPGPPGQAGTPGSPGDAGSPGSCEHCP 277
>AF068720-8|AAM15583.1| 142|Caenorhabditis elegans Hypothetical
protein K02H11.6 protein.
Length = 142
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 593 VLAHHDPCQEELPSFLEEGHPSWGLLAFGR--SRKLTT 486
V A D + +L +++EE H +W + FG KL+T
Sbjct: 61 VFASSDQSESDLKNYMEECHGNWYYIPFGNDAEEKLST 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,264
Number of Sequences: 27780
Number of extensions: 250372
Number of successful extensions: 747
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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