Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30631
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    75   4e-15
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    75   6e-15
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   0.38 
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    28   0.66 
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    28   0.66 
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   1.1  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   2.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   4.6  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   6.1  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   6.1  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   6.1  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   8.1  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.1  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   8.1  

>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 75.4 bits (177), Expect = 4e-15
 Identities = 34/63 (53%), Positives = 48/63 (76%)
 Frame = +2

Query: 251 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 430
           PNG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++R
Sbjct: 65  PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVR 124

Query: 431 SQE 439
           SQE
Sbjct: 125 SQE 127



 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 23/35 (65%), Positives = 28/35 (80%)
 Frame = +1

Query: 76  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 180
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VR
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVR 40



 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +3

Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254
           +RF+G   MP IGYG+NKKTR+ +P
Sbjct: 41  RRFRGTISMPKIGYGNNKKTRYCMP 65


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 74.9 bits (176), Expect = 6e-15
 Identities = 34/63 (53%), Positives = 48/63 (76%)
 Frame = +2

Query: 251 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 430
           PNG +  LV NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++R
Sbjct: 65  PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVR 124

Query: 431 SQE 439
           SQE
Sbjct: 125 SQE 127



 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = +1

Query: 76  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 180
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VR
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVR 40



 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +3

Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254
           +RF+G   MP IGYG+NKKTR+ +P
Sbjct: 41  RRFRGTISMPKIGYGNNKKTRYCMP 65


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 442 VLLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 320
           VL   +   R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 15/93 (16%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
 Frame = +2

Query: 164 LTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAH 343
           + TE + +  S++    R+ ++    + + N  R+  +HN++ ++ L+ Q  ++C +   
Sbjct: 567 IDTEFSTVSHSLIF--QRIIYRLTQSASSDNALREWFLHNIESIDQLIAQAHEFCIDSGS 624

Query: 344 GVSSKKRKL--IVERAQQLSIRVTNAAARLRSQ 436
            V     ++  ++  A ++ + + ++A   R +
Sbjct: 625 RVQELPLEVLDVIMEANEVILAIQSSALAYRRE 657


>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 3   HRVVHCR--VS*RNIQDGYKTCLQADNRQKEDEEIYQASIG 119
           HRV++ R  +S R+I  G +   Q D  ++E  EIYQ S+G
Sbjct: 57  HRVINSRGTISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -3

Query: 150 TPIPLKFV--IAIRLMPDKSLRP 88
           TP+P+KFV  IA+  MP  +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 8/149 (5%)
 Frame = +2

Query: 8    RGSLSR--FLKKHTRWL*DLFTGRQSSKRGRRDL-----SGINRIAMTNLRGIGVN-LEV 163
            RGS SR  F KKH RW   L +  ++  R    L       +N  +      +  N +  
Sbjct: 931  RGSSSRGAFYKKHNRWTEGLISAAKAVARATTTLIETADGVVNGTSSFEHLIVACNGVSA 990

Query: 164  LTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAH 343
             T +  A      +   +++   ED + A     K LV  V+ +  L  +  ++    + 
Sbjct: 991  ATAQLVAASRVKANFASKVQDHLEDAAKAVTEACKALVRQVESV-ALKAKEVQHEDFSSL 1049

Query: 344  GVSSKKRKLIVERAQQLSIRVTNAAARLR 430
            GV   +RK I ++ Q L +     AAR R
Sbjct: 1050 GVHEYRRKEIEQQVQILKLENDLVAARRR 1078


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 454  LYLIVLLGPEASGRIRHSDAELLGSFHDQLPLLRR-DTVSDLCAVLPVLHHQDFQLFN 284
            LYLI+ LG   +  +R +    +GS   +LPL++  +    L  +L +   + F  F+
Sbjct: 1194 LYLILYLGNYMNDYVRQAKGFAIGSL-QRLPLIKNANNTKSLLHILDITIRKHFPQFD 1250


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 36  NIQDGYKTCLQADNRQKEDEEIYQASIGS 122
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 223 VPTRRPVICSQWIP 264
           +PT+ PV C+ W P
Sbjct: 205 IPTKHPVTCADWRP 218


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 36  NIQDGYKTCLQADNRQKEDEEIYQASIGS 122
           NI DGY   +  D   K+D  + +  +G+
Sbjct: 95  NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 2   SPRGSLSRFLKKHTRWL*DL-FTGRQSSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTES 178
           SP  SLS ++++H +W  D+  T  +  K G  D+   N     +   +G   +++  E 
Sbjct: 741 SPISSLSEWIREHLKWSSDVPITYYEEIKTGMVDVLDPNASFEKSEIQVG---DIICFEK 797

Query: 179 AAIQGSILDAQH 214
             +  S  D  H
Sbjct: 798 KLVHDSSSDTSH 809


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 307 DAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPG 438
           D K+    R+      +E  A   K P   + S  C R+PP  G
Sbjct: 125 DKKRRAAERENKNSSVKETAAPI-KQPKNANSSSTCTRTPPTSG 167


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 326 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 412
           C  + HGV   + K ++ER    +   +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,572
Number of Sequences: 5004
Number of extensions: 35490
Number of successful extensions: 106
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)