BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30631 (488 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 75 4e-15 SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 75 6e-15 SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 29 0.38 SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 28 0.66 SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac... 28 0.66 SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 1.1 SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 2.0 SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 4.6 SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 6.1 SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 6.1 SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 6.1 SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 8.1 SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 8.1 SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.1 >SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 2|||Manual Length = 127 Score = 75.4 bits (177), Expect = 4e-15 Identities = 34/63 (53%), Positives = 48/63 (76%) Frame = +2 Query: 251 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 430 PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVR 124 Query: 431 SQE 439 SQE Sbjct: 125 SQE 127 Score = 52.4 bits (120), Expect = 4e-08 Identities = 23/35 (65%), Positives = 28/35 (80%) Frame = +1 Query: 76 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 180 IVKKRTK F RHQSD + ++ +WRKPRGID+ VR Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVR 40 Score = 39.5 bits (88), Expect = 3e-04 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = +3 Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254 +RF+G MP IGYG+NKKTR+ +P Sbjct: 41 RRFRGTISMPKIGYGNNKKTRYCMP 65 >SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 1|||Manual Length = 127 Score = 74.9 bits (176), Expect = 6e-15 Identities = 34/63 (53%), Positives = 48/63 (76%) Frame = +2 Query: 251 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 430 PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVR 124 Query: 431 SQE 439 SQE Sbjct: 125 SQE 127 Score = 54.8 bits (126), Expect = 7e-09 Identities = 23/35 (65%), Positives = 29/35 (82%) Frame = +1 Query: 76 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 180 I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VR Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVR 40 Score = 39.5 bits (88), Expect = 3e-04 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = +3 Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254 +RF+G MP IGYG+NKKTR+ +P Sbjct: 41 RRFRGTISMPKIGYGNNKKTRYCMP 65 >SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 511 Score = 29.1 bits (62), Expect = 0.38 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -2 Query: 442 VLLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 320 VL + R+ HSD + + +F DQ +RR + LC +L Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179 >SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosaccharomyces pombe|chr 1|||Manual Length = 1162 Score = 28.3 bits (60), Expect = 0.66 Identities = 15/93 (16%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Frame = +2 Query: 164 LTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAH 343 + TE + + S++ R+ ++ + + N R+ +HN++ ++ L+ Q ++C + Sbjct: 567 IDTEFSTVSHSLIF--QRIIYRLTQSASSDNALREWFLHNIESIDQLIAQAHEFCIDSGS 624 Query: 344 GVSSKKRKL--IVERAQQLSIRVTNAAARLRSQ 436 V ++ ++ A ++ + + ++A R + Sbjct: 625 RVQELPLEVLDVIMEANEVILAIQSSALAYRRE 657 >SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosaccharomyces pombe|chr 1|||Manual Length = 108 Score = 28.3 bits (60), Expect = 0.66 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = +3 Query: 3 HRVVHCR--VS*RNIQDGYKTCLQADNRQKEDEEIYQASIG 119 HRV++ R +S R+I G + Q D ++E EIYQ S+G Sbjct: 57 HRVINSRGTISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95 >SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pombe|chr 2|||Manual Length = 558 Score = 27.5 bits (58), Expect = 1.1 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%) Frame = -3 Query: 150 TPIPLKFV--IAIRLMPDKSLRP 88 TP+P+KFV IA+ MP +LRP Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449 >SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1092 Score = 26.6 bits (56), Expect = 2.0 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 8/149 (5%) Frame = +2 Query: 8 RGSLSR--FLKKHTRWL*DLFTGRQSSKRGRRDL-----SGINRIAMTNLRGIGVN-LEV 163 RGS SR F KKH RW L + ++ R L +N + + N + Sbjct: 931 RGSSSRGAFYKKHNRWTEGLISAAKAVARATTTLIETADGVVNGTSSFEHLIVACNGVSA 990 Query: 164 LTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAH 343 T + A + +++ ED + A K LV V+ + L + ++ + Sbjct: 991 ATAQLVAASRVKANFASKVQDHLEDAAKAVTEACKALVRQVESV-ALKAKEVQHEDFSSL 1049 Query: 344 GVSSKKRKLIVERAQQLSIRVTNAAARLR 430 GV +RK I ++ Q L + AAR R Sbjct: 1050 GVHEYRRKEIEQQVQILKLENDLVAARRR 1078 >SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1|||Manual Length = 1841 Score = 25.4 bits (53), Expect = 4.6 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -2 Query: 454 LYLIVLLGPEASGRIRHSDAELLGSFHDQLPLLRR-DTVSDLCAVLPVLHHQDFQLFN 284 LYLI+ LG + +R + +GS +LPL++ + L +L + + F F+ Sbjct: 1194 LYLILYLGNYMNDYVRQAKGFAIGSL-QRLPLIKNANNTKSLLHILDITIRKHFPQFD 1250 >SPBC336.10c |tif512||translation initiation factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 157 Score = 25.0 bits (52), Expect = 6.1 Identities = 9/29 (31%), Positives = 15/29 (51%) Frame = +3 Query: 36 NIQDGYKTCLQADNRQKEDEEIYQASIGS 122 NI DGY + D K+D + + +G+ Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123 >SPCC1235.09 |||histone deacetylase complex subunit|Schizosaccharomyces pombe|chr 3|||Manual Length = 564 Score = 25.0 bits (52), Expect = 6.1 Identities = 7/14 (50%), Positives = 10/14 (71%) Frame = +1 Query: 223 VPTRRPVICSQWIP 264 +PT+ PV C+ W P Sbjct: 205 IPTKHPVTCADWRP 218 >SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizosaccharomyces pombe|chr 1|||Manual Length = 157 Score = 25.0 bits (52), Expect = 6.1 Identities = 9/29 (31%), Positives = 15/29 (51%) Frame = +3 Query: 36 NIQDGYKTCLQADNRQKEDEEIYQASIGS 122 NI DGY + D K+D + + +G+ Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123 >SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ubp21|Schizosaccharomyces pombe|chr 2|||Manual Length = 1129 Score = 24.6 bits (51), Expect = 8.1 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Frame = +2 Query: 2 SPRGSLSRFLKKHTRWL*DL-FTGRQSSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTES 178 SP SLS ++++H +W D+ T + K G D+ N + +G +++ E Sbjct: 741 SPISSLSEWIREHLKWSSDVPITYYEEIKTGMVDVLDPNASFEKSEIQVG---DIICFEK 797 Query: 179 AAIQGSILDAQH 214 + S D H Sbjct: 798 KLVHDSSSDTSH 809 >SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 240 Score = 24.6 bits (51), Expect = 8.1 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +1 Query: 307 DAKQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPG 438 D K+ R+ +E A K P + S C R+PP G Sbjct: 125 DKKRRAAERENKNSSVKETAAPI-KQPKNANSSSTCTRTPPTSG 167 >SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 948 Score = 24.6 bits (51), Expect = 8.1 Identities = 8/29 (27%), Positives = 14/29 (48%) Frame = +2 Query: 326 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 412 C + HGV + K ++ER + +N Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,845,572 Number of Sequences: 5004 Number of extensions: 35490 Number of successful extensions: 106 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 106 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 190087364 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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