Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30631
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   1e-23
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)               33   0.13 
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)                  30   0.89 
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)               30   0.89 
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   3.6  
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   4.7  
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)                   27   6.3  
SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)       27   6.3  
SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  105 bits (253), Expect = 1e-23
 Identities = 49/65 (75%), Positives = 58/65 (89%)
 Frame = +2

Query: 251 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 430
           P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VTN+ ARLR
Sbjct: 69  PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVTNSNARLR 128

Query: 431 SQEND 445
           S+EN+
Sbjct: 129 SEENE 133



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 29/43 (67%), Positives = 36/43 (83%)
 Frame = +1

Query: 52  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 180
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVR
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVR 44



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 21/25 (84%), Positives = 24/25 (96%)
 Frame = +3

Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254
           +RFKGQYLMPNIGYGSNKKTR ++P
Sbjct: 45  RRFKGQYLMPNIGYGSNKKTRFLMP 69


>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
          Length = 758

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +2

Query: 155 LEVLTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRK 322
           +E L  E+  ++G++   +  +++Q+E     P G RK +   ++ELE ++    K
Sbjct: 586 IEALRHENKVLKGTLEITEGEVKYQREHTGRTPKGKRKEIWREIRELETILKDVHK 641


>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
          Length = 1002

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 313 KQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 444
           +Q ++   R  C   +A    G  P+  H+  + GR  PVPG+R
Sbjct: 774 QQRLIEHHRKNCPRLQATIRFGPDPSVAHRYRKQGRPVPVPGKR 817


>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 839

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 215 RLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHG-VSSKKRKLI 373
           +L+ Q+  PS  P  + +++V  ++E E+     RK+C EIA+  V S  R+++
Sbjct: 271 KLKCQKYWPSANPEEYGRLVVTPLEEEELSHYVIRKFCIEIANSDVESPAREIV 324


>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 307 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 444
           D+KQ EV R +    +F+ A      S    H+  + GR  PVPG+R
Sbjct: 662 DSKQLEVFREEWDGVVFDAAIEKAHPSDIVAHRYRKQGRPVPVPGKR 708


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 403 SDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHH 305
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 24/89 (26%), Positives = 44/89 (49%)
 Frame = +2

Query: 173 ESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVS 352
           E   ++   LDA+ R +F+QE        F  VLV +++E E    Q ++   EIA  + 
Sbjct: 76  ERNKLRNQKLDAK-RKKFKQEKHLLYNLEFSPVLVLDLEESEKSAKQEKESDEEIARRLQ 134

Query: 353 SKKRKLIVERAQQLSIRVTNAAARLRSQE 439
           ++  +L  E ++ L  +     A++R +E
Sbjct: 135 AEIERLREEGSRLLQEQQELLKAQIREEE 163


>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
          Length = 124

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 371 SASASSKRHRERSLRSTSCFASSRFPAL*HCEL 273
           S   + +R  +RS + ++C AS R P+   CEL
Sbjct: 21  STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53


>SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)
          Length = 496

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -2

Query: 466 LIIQLYLIVLLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHHQDFQLF 287
           L ++ +   L G   S R ++    L+GS  +Q    R D + +L   L +  H DF L 
Sbjct: 319 LQLKAFAEFLKGQPKSSRSQYK-LVLIGSCRNQDDADRVDNLRELAKSLSIRKHVDFAL- 376

Query: 286 NIVN*DLTESIGS 248
           N+   +L E IGS
Sbjct: 377 NVSFDELREFIGS 389


>SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 307 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 444
           D+KQ EV R +     F+ A      S    H+  + GR  PVPG+R
Sbjct: 170 DSKQLEVFREEWDGVAFDAAIEQVHPSHIVAHRYRKKGRPVPVPGKR 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,340
Number of Sequences: 59808
Number of extensions: 272184
Number of successful extensions: 1000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)