Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30631
(488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 89 2e-18
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 27 5.5
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 27 5.5
Z67990-7|CAA91938.1| 406|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z75712-8|CAB00047.1| 319|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr... 27 9.7
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 27 9.7
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 27 9.7
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 27 9.7
AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode ast... 27 9.7
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 27 9.7
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 88.6 bits (210), Expect = 2e-18
Identities = 40/65 (61%), Positives = 55/65 (84%)
Frame = +2
Query: 251 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 430
PNG++KVLV NVK+L++L+MQ+ KY EI HGVS+K RK IVERA QL+I++TN ARLR
Sbjct: 70 PNGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLR 129
Query: 431 SQEND 445
++E++
Sbjct: 130 TEESE 134
Score = 54.4 bits (125), Expect = 4e-08
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +1
Query: 76 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRSDSRVNT*CPT 213
+VKK+ +F RH+SDRY ++ +WRKP+GIDNRVR R PT
Sbjct: 11 VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPT 56
Score = 35.1 bits (77), Expect = 0.028
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254
+RF+G MP IG+GS+++TR +LP
Sbjct: 46 RRFRGMRAMPTIGHGSDRRTRFVLP 70
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 27.5 bits (58), Expect = 5.5
Identities = 26/110 (23%), Positives = 46/110 (41%)
Frame = +2
Query: 74 QSSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQEDPSYAP 253
+S K R+DL + +T R + + +E L + + Q L QE+ Y
Sbjct: 670 KSMKEARKDLERDLQDVITEKRRLEIRVEQLMDSRNTDERVLSLCQDELVESQEEAKYKE 729
Query: 254 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 403
+G R + ELE M+ + + V+ K+R ++ Q+L R
Sbjct: 730 DGLRGKIDGFKHELENEKMKTQTLEENLL--VADKERGMLKMEVQELMQR 777
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 27.5 bits (58), Expect = 5.5
Identities = 26/110 (23%), Positives = 46/110 (41%)
Frame = +2
Query: 74 QSSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQEDPSYAP 253
+S K R+DL + +T R + + +E L + + Q L QE+ Y
Sbjct: 670 KSMKEARKDLERDLQDVITEKRRLEIRVEQLMDSRNTDERVLSLCQDELVESQEEAKYKE 729
Query: 254 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 403
+G R + ELE M+ + + V+ K+R ++ Q+L R
Sbjct: 730 DGLRGKIDGFKHELENEKMKTQTLEENLL--VADKERGMLKMEVQELMQR 777
>Z67990-7|CAA91938.1| 406|Caenorhabditis elegans Hypothetical
protein F02D10.7 protein.
Length = 406
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 158 EVLTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEIL 304
EVLT + +++ ++ F ++D ++ GF +L V +IL
Sbjct: 119 EVLTEKDEIFCSGVIEDWNQNHFAKQDENFGKEGFASILFDGVGSRQIL 167
>Z75712-8|CAB00047.1| 319|Caenorhabditis elegans Hypothetical
protein K04G2.10 protein.
Length = 319
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 42 QDGYKTCLQADNRQKEDEEIYQASIGSL*QT*EEL 146
QD K + D+RQKE E Y+ IGS+ + E++
Sbjct: 238 QDMVKYMEENDDRQKESIEKYKRKIGSMKKVIEKM 272
>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
K07G5.3 protein.
Length = 1202
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 162 TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFFKKRD--SEPRG 4
T R++ +P +++ +R+ ++ ++ FD+ R HLV + R+ PRG
Sbjct: 1068 TVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREILENPRG 1122
>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
protein 104, isoforma protein.
Length = 1584
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 439 LLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 320
LL P + G +R + LLG + D L + + D+C ++
Sbjct: 154 LLNPNSGGNLRVREHPLLGPYVDDLTKMAVCSYHDICNLM 193
>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
protein 104, isoformb protein.
Length = 1628
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 439 LLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 320
LL P + G +R + LLG + D L + + D+C ++
Sbjct: 154 LLNPNSGGNLRVREHPLLGPYVDDLTKMAVCSYHDICNLM 193
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 439 LLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 320
LL P + G +R + LLG + D L + + D+C ++
Sbjct: 154 LLNPNSGGNLRVREHPLLGPYVDDLTKMAVCSYHDICNLM 193
>AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode
astacin protease protein32 protein.
Length = 651
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 433 GPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHHQDF 296
G E +G H A LG FH Q+ R D V+ +P Q+F
Sbjct: 282 GCEVTGTAAHEIAHTLGLFHTQMRSDRDDYVTIDLTDVPESSQQNF 327
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 26.6 bits (56), Expect = 9.7
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +2
Query: 125 MTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNV---KEL 295
M ++G+G+N + + A ILD+ R RF++ P+ + + + K
Sbjct: 243 MVQMQGVGLNNDGILVLGATNIPWILDSAIRRRFEKRIYIPLPDIHARKEMFRIDVGKNY 302
Query: 296 EILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 430
L Q+ K AE G S ++V+ A +R +A +
Sbjct: 303 NTLTDQDFKVLAERCEGYSGYDISILVKDALMQPVRRVQSATHFK 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,305,759
Number of Sequences: 27780
Number of extensions: 200986
Number of successful extensions: 629
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -