Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30631
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   118   4e-29
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   7.0  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   7.0  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.3  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  118 bits (283), Expect = 4e-29
 Identities = 57/65 (87%), Positives = 61/65 (93%)
 Frame = +2

Query: 251 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 430
           P GFRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK IVERAQQLSIRVT A+ARLR
Sbjct: 70  PTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLR 129

Query: 431 SQEND 445
           SQEN+
Sbjct: 130 SQENE 134



 Score = 96.3 bits (229), Expect = 2e-22
 Identities = 42/45 (93%), Positives = 44/45 (97%)
 Frame = +1

Query: 46  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 180
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVR
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVR 45



 Score = 58.0 bits (134), Expect = 5e-11
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +3

Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254
           +RFKGQYLMPNIGYGSNKKTRHMLP
Sbjct: 46  RRFKGQYLMPNIGYGSNKKTRHMLP 70


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 433 GPEASGRIRHSDA 395
           GP   GR +H+DA
Sbjct: 45  GPNELGRFKHTDA 57


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 433 GPEASGRIRHSDA 395
           GP   GR +H+DA
Sbjct: 50  GPNELGRFKHTDA 62


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 433 GPEASGRIRHSDA 395
           GP   GR +H+DA
Sbjct: 50  GPNELGRFKHTDA 62


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 322  LPVLHHQDFQLFNI 281
            LP L H D Q FN+
Sbjct: 1031 LPELRHGDIQGFNV 1044


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 461 NTIIFNRSPGTGGER 417
           N+   N SPG+GG R
Sbjct: 280 NSTTMNGSPGSGGIR 294


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 322  LPVLHHQDFQLFNI 281
            LP L H D Q FN+
Sbjct: 1027 LPELRHGDIQGFNV 1040


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,173
Number of Sequences: 438
Number of extensions: 2432
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)