Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30631
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 102 1e-22
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 99 1e-21
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 99 1e-21
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ... 28 3.9
At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)... 27 5.1
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain... 27 5.1
At2g37370.1 68415.m04583 hypothetical protein 27 5.1
At1g26570.1 68414.m03237 UDP-glucose 6-dehydrogenase, putative s... 27 5.1
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 27 6.8
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 27 6.8
At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative v... 27 9.0
At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative v... 27 9.0
At4g14740.2 68417.m02267 expressed protein 27 9.0
At4g14740.1 68417.m02266 expressed protein 27 9.0
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 9.0
At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative v... 27 9.0
At3g22810.1 68416.m02875 expressed protein ; expression support... 27 9.0
>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
ribosomal protein L32, human, PIR1:R5HU32
Length = 133
Score = 102 bits (244), Expect = 1e-22
Identities = 47/67 (70%), Positives = 54/67 (80%)
Frame = +2
Query: 245 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 424
Y PNGF+K +VHN ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN AR
Sbjct: 67 YLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLAR 126
Query: 425 LRSQEND 445
LRSQE++
Sbjct: 127 LRSQEDE 133
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 180
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVR 44
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +3
Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254
++FKG LMPN+GYGS+KKTRH LP
Sbjct: 45 RKFKGVTLMPNVGYGSDKKTRHYLP 69
>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 99.1 bits (236), Expect = 1e-21
Identities = 44/67 (65%), Positives = 53/67 (79%)
Frame = +2
Query: 245 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 424
Y PNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N R
Sbjct: 67 YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126
Query: 425 LRSQEND 445
LRSQE++
Sbjct: 127 LRSQEDE 133
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 180
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVR 44
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +3
Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254
++FKG LMPN+GYGS+KKTRH LP
Sbjct: 45 RKFKGVTLMPNVGYGSDKKTRHYLP 69
>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 99.1 bits (236), Expect = 1e-21
Identities = 44/67 (65%), Positives = 53/67 (79%)
Frame = +2
Query: 245 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 424
Y PNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N R
Sbjct: 67 YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126
Query: 425 LRSQEND 445
LRSQE++
Sbjct: 127 LRSQEDE 133
Score = 52.8 bits (121), Expect = 1e-07
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 180
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVR 44
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +3
Query: 180 QRFKGQYLMPNIGYGSNKKTRHMLP 254
++FKG LMPN+GYGS+KKTRH LP
Sbjct: 45 RKFKGVTLMPNVGYGSDKKTRHYLP 69
>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain);
Length = 211
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 257 GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQ 436
G +K +V VK++E+L + NRK + S K+ I + ++ V A+L
Sbjct: 90 GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149
Query: 437 E 439
E
Sbjct: 150 E 150
>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
nearly identical to SH3 domain-containing protein 3
[Arabidopsis thaliana] GI:16974680; contains Pfam
profile PF00018: SH3 domain
Length = 351
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 116 RIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQ 232
++A ++ + N+ VL E+ A ++ QHRL FQ+
Sbjct: 194 QLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQR 232
>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
protein similar to PF02225: PA domain; similar to
N-acetylated-alpha-linked acidic dipeptidase II
(NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
Glutamate carboxypeptidase II (Membrane glutamate
carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
acidic dipeptidase I) (NAALADase I)
(Pteroylpoly-gamma-glutamate
carboxypeptidase)(Folylpoly-gamma-glutamate
carboxypeptidase) (FGCP) (Folate hydrolase 1)
(Prostate-specific membrane antigen homolog) (SP|O77564)
{Sus scrofa}
Length = 280
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 49 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 159
A+ P ++ + +K +++H + R DKL++ KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230
>At2g37370.1 68415.m04583 hypothetical protein
Length = 697
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 98 DLSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLV 277
++ + + L+ + + E L E + SI A+ RLR QE+ N ++L+
Sbjct: 344 EVGQLEKDVAAELKKLEILKEDLEAELKRVNTSITSARARLRNAQEEREQFDNASNEILM 403
Query: 278 H-NVKELEI 301
H KE E+
Sbjct: 404 HLKSKEEEL 412
>At1g26570.1 68414.m03237 UDP-glucose 6-dehydrogenase, putative
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 481
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 110 INRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQED-PSYAPNGFRKVLVHNV 286
+N T G G ++ ESAA + + ++ ++ P K+L HN
Sbjct: 86 VNTPTKTQGLGAGKAADLTYWESAARMIADVSKSSKIVVEKSTVPVRTAEAIEKILTHNS 145
Query: 287 KELEILMMQNRKYCAE 334
K +E ++ N ++ AE
Sbjct: 146 KGIEFQILSNPEFLAE 161
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 266 KVLVHNVKELEILMMQNRKYCAEIAHGVSSKK 361
K LV N+ E ++ Q RK+C I VSS K
Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLK 1273
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 254 WEHMTGLLVGTVTDVGHQVLTLESLRTL 171
W + G VG V D ++VL ++SLR +
Sbjct: 517 WHYHGGCQVGRVVDKNYRVLGIDSLRVI 544
>At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 110 INRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQED-PSYAPNGFRKVLVHNV 286
+N T G G ++ ESAA + + ++ ++ P K+L+HN
Sbjct: 86 VNTPTKTTGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILMHNS 145
Query: 287 KELEILMMQNRKYCAE 334
K ++ ++ N ++ AE
Sbjct: 146 KGIKFQILSNPEFLAE 161
>At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 26.6 bits (56), Expect = 9.0
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +2
Query: 56 DLFTGRQSSKRGRR-DLSGINRIAMTNLRGIGVNLEVLTT--ESAAIQGSILDAQHRLRF 226
+LF K R D+ ++ T RG+G T ESAA + + ++
Sbjct: 65 NLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSDKIVV 124
Query: 227 QQED-PSYAPNGFRKVLVHNVKELEILMMQNRKYCAE 334
++ P K+L HN K ++ ++ N ++ AE
Sbjct: 125 EKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161
>At4g14740.2 68417.m02267 expressed protein
Length = 475
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -2
Query: 436 LGPEASGRIRHSDAELLGSFHDQLPLL--RRDTVSDLC 329
+ P SGR+ HS L GS D P+ D + C
Sbjct: 107 VSPRTSGRLSHSSGPLNGSLTDSPPVSPPESDDIKQFC 144
>At4g14740.1 68417.m02266 expressed protein
Length = 475
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -2
Query: 436 LGPEASGRIRHSDAELLGSFHDQLPLL--RRDTVSDLC 329
+ P SGR+ HS L GS D P+ D + C
Sbjct: 107 VSPRTSGRLSHSSGPLNGSLTDSPPVSPPESDDIKQFC 144
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 33 RNIQDGYKTCLQADNRQKEDE 95
RN+ G KTCL N +E+E
Sbjct: 517 RNLLSGLKTCLDVSNYMRENE 537
>At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 26.6 bits (56), Expect = 9.0
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +2
Query: 56 DLFTGRQSSKRGRR-DLSGINRIAMTNLRGIGVNLEVLTT--ESAAIQGSILDAQHRLRF 226
+LF K R D+ ++ T RG+G T ESAA + + ++
Sbjct: 65 NLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSDKIVV 124
Query: 227 QQED-PSYAPNGFRKVLVHNVKELEILMMQNRKYCAE 334
++ P K+L HN K ++ ++ N ++ AE
Sbjct: 125 EKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 436 LGPEASGRIRHSDAELLGSFHDQLPL 359
+ P SGR+ HS L GS D P+
Sbjct: 106 VSPRTSGRLSHSSGPLNGSLTDSPPI 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,768,412
Number of Sequences: 28952
Number of extensions: 190345
Number of successful extensions: 679
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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