Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30630
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    30   0.29 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   2.0  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    26   3.5  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   4.7  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.1  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    25   8.1  

>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 524 RRGRLVSPLAPTLQINYVSLNTPVLAVSL 438
           R GRL +PL+ T++IN+ +  TP LA  L
Sbjct: 30  RSGRLFAPLSHTMRINHAATFTPDLAKRL 58


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 16  AEPSPSLTSLAIPHPLTSPTRSVVSPPAP 102
           A P+P+ T     HP   P RS +SP  P
Sbjct: 730 APPTPAPTPAVKHHPPPPPVRSSISPSMP 758


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 551 EVWGLMGHDRRGRLVSPLAPTL 486
           EV  ++G+ +RG L++P+ P+L
Sbjct: 195 EVLPVLGYKKRGHLMNPMVPSL 216


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 22  PSP-SLTSLAIPHPLTSPTRSVVSPPAP*YLP 114
           P P S+   A  H   +PTRSV +P  P Y P
Sbjct: 473 PLPVSMKPSADDHSRATPTRSVEAPTLPSYAP 504


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 379 QTLLPRC--WVYGFGNLKVAVFNE 444
           QT+LP    W Y F NLK+ V +E
Sbjct: 422 QTILPNANRWYYFFKNLKLFVLDE 445


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 414 KTIYPTTWKKSLKLSLNCQFIIINE 340
           ++I P +W K +KL    QF+I +E
Sbjct: 458 ESIMPASWLKGIKLLARQQFLIRDE 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,929
Number of Sequences: 5004
Number of extensions: 29121
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)