Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30630
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0482 - 29672720-29673854,29673941-29676267                       33   0.17 
09_06_0083 + 20753191-20754480                                         29   2.1  
09_06_0081 + 20745627-20748144,20748211-20748308                       29   3.6  
01_01_0490 + 3620523-3623403,3623524-3623996                           29   3.6  
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375...    28   6.3  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    27   8.3  

>01_06_0482 - 29672720-29673854,29673941-29676267
          Length = 1153

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 578  ENEQNKNKREV--WGLMGHDRRGRLVSPLAPTLQINYVSLNTPVLAVSLNTATFKLPKP 408
            +N   KN+R    WGL+G++    L+  L   L+ NY  + TP+LA+      F  PKP
Sbjct: 949  QNVDKKNRRSGRRWGLLGNNFTVALMVQLRDPLR-NYEPVGTPMLALIQVERVFVPPKP 1006


>09_06_0083 + 20753191-20754480
          Length = 429

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 4   CSETAEPSPSLTSLAIPHPLTSPTRSVVSPPA 99
           C   A  SPS T   +P P T+ T  +++PPA
Sbjct: 171 CGAAAPVSPSPTMDVLPPPSTTTTAKLLTPPA 202


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 16  AEPSPSLTSLAIPHPLT-SPTRSVVSPPAP 102
           A P+P+  + A P P+  +PTR V +PPAP
Sbjct: 348 APPAPTPPAPATPVPMPPTPTRLVPTPPAP 377


>01_01_0490 + 3620523-3623403,3623524-3623996
          Length = 1117

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 6    LGDRGALPLADVTRNTSPPHFADAFRSLAPSSVILTE 116
            L D G   +AD   N+SPP FA ++  +AP    +T+
Sbjct: 931  LADFGLARVADDGANSSPPPFAGSYGYIAPEYGCMTK 967


>10_07_0107 -
           12936839-12937030,12937305-12937386,12937476-12937586,
           12937667-12937918,12938004-12940237,12940328-12940525
          Length = 1022

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +1

Query: 19  EPSPSLTSLAIPHPLTSPTRSVVSPPAP*YLPNL 120
           EP PS   L  P PL SP R    PP+P   P L
Sbjct: 575 EP-PSPRHLPSPPPLRSPPRQPTPPPSPSQQPPL 607


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 25   SPSLTSLAIPHPLTSPTRSVVSPPAP*YLPNLKG 126
            SP+  S +   P  SPT S  SP +P Y P   G
Sbjct: 1760 SPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPG 1793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,383,829
Number of Sequences: 37544
Number of extensions: 208148
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)